HL_9AZS_006
3D structure
- PDB id
- 9AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Post-eEF1A-AT-P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUUCAAGUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9AZS_006 not in the Motif Atlas
- Homologous match to HL_5HR7_006
- Geometric discrepancy: 0.2269
- The information below is about HL_5HR7_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9AZS|1|Et|G|53
9AZS|1|Et|U|54
9AZS|1|Et|U|55
9AZS|1|Et|C|56
9AZS|1|Et|A|57
9AZS|1|Et|A|58
9AZS|1|Et|G|59
9AZS|1|Et|U|60
9AZS|1|Et|C|61
Current chains
- Chain Et
- E site tRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Lz
- 60S ribosomal protein L10a
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