HL_9AZS_033
3D structure
- PDB id
- 9AZS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Post-eEF1A-AT-P-E state 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGGCGUG
- Length
- 8 nucleotides
- Bulged bases
- 9AZS|1|L5|G|1821
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9AZS_033 not in the Motif Atlas
- Homologous match to HL_8CRE_023
- Geometric discrepancy: 0.4573
- The information below is about HL_8CRE_023
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_77436.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
9AZS|1|L5|C|1816
9AZS|1|L5|U|1817
9AZS|1|L5|G|1818
9AZS|1|L5|G|1819
9AZS|1|L5|C|1820
9AZS|1|L5|G|1821
9AZS|1|L5|U|1822
9AZS|1|L5|G|1823
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LD
- Large ribosomal subunit protein uL18
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
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