HL_9AZS_077

3D structure

PDB id

9AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZS_077 not in the Motif Atlas

Homologous match to HL_8CRE_064

Geometric discrepancy: 0.073

The information below is about HL_8CRE_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9AZS|1|L5|C|4603
9AZS|1|L5|G|4604
9AZS|1|L5|A|4605
9AZS|1|L5|G|4606
9AZS|1|L5|A|4607
9AZS|1|L5|G|4608

Current chains

Chain L5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain CF

Elongation factor 1-alpha 1

Chain LH

60S ribosomal protein L9

Chain Lm

Large ribosomal subunit protein eL40