HL_9AZS_082

3D structure

PDB id

9AZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P-E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9AZS|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9AZS_082 not in the Motif Atlas

Homologous match to HL_8CRE_069

Geometric discrepancy: 0.0922

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9AZS|1|L5|G|4975
9AZS|1|L5|U|4976
9AZS|1|L5|A|4977
9AZS|1|L5|G|4978
9AZS|1|L5|A|4979
9AZS|1|L5|C|4980
9AZS|1|L5|G|4981
9AZS|1|L5|A|4982
9AZS|1|L5|C|4983

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17