HL_9B00_039

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9B00|1|1A|A|1614, 9B00|1|1A|A|1616, 9B00|1|1A|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B00_039 not in the Motif Atlas

Homologous match to HL_8VTW_039

Geometric discrepancy: 0.0619

The information below is about HL_8VTW_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56817.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9B00|1|1A|C|1612
9B00|1|1A|G|1613
9B00|1|1A|A|1614
9B00|1|1A|C|1615
9B00|1|1A|A|1616
9B00|1|1A|C|1617
9B00|1|1A|A|1618
9B00|1|1A|G|1619

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1W

50S ribosomal protein L22