HL_9B00_053
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUAAAAGGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9B00|1|1A|A|2268, 9B00|1|1A|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B00_053 not in the Motif Atlas
- Homologous match to HL_8VTW_053
- Geometric discrepancy: 0.0555
- The information below is about HL_8VTW_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19870.9
- Basepair signature
- cWW-tHH-cWW-tHS-F-F-tWW
- Number of instances in this motif group
- 8
Unit IDs
9B00|1|1A|C|2264
9B00|1|1A|U|2265
9B00|1|1A|A|2266
9B00|1|1A|A|2267
9B00|1|1A|A|2268
9B00|1|1A|A|2269
9B00|1|1A|G|2270
9B00|1|1A|G|2271
9B00|1|1A|U|2272
9B00|1|1A|A|2273
9B00|1|1A|A|2274
9B00|1|1A|C|2275
9B00|1|1A|G|2276
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 10
- 50S ribosomal protein L27
- Chain 1B
- 5S ribosomal RNA; 5S rRNA
- Chain 1Q
- 50S ribosomal protein L16
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