HL_9B00_065

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9B00|1|1A|G|2751, 9B00|1|1A|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B00_065 not in the Motif Atlas

Homologous match to HL_8VTW_065

Geometric discrepancy: 0.0599

The information below is about HL_8VTW_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9B00|1|1A|C|2745
9B00|1|1A|U|2746
9B00|1|1A|G|2747
9B00|1|1A|A|2748
9B00|1|1A|A|2749
9B00|1|1A|A|2750
9B00|1|1A|G|2751
9B00|1|1A|C|2752
9B00|1|1A|A|2753
9B00|1|1A|U|2754
9B00|1|1A|C|2755
9B00|1|1A|U|2756
9B00|1|1A|A|2757
9B00|1|1A|A|2758
9B00|1|1A|G|2759

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L36

Chain 1H

50S ribosomal protein L6

Chain 1N

50S ribosomal protein L13