HL_9B00_087
3D structure
- PDB id
- 9B00 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 9B00|1|1a|U|793
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B00_087 not in the Motif Atlas
- Homologous match to HL_4LFB_017
- Geometric discrepancy: 0.092
- The information below is about HL_4LFB_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
9B00|1|1a|G|786
9B00|1|1a|A|787
9B00|1|1a|U|788
9B00|1|1a|U|789
9B00|1|1a|A|790
9B00|1|1a|G|791
9B00|1|1a|A|792
9B00|1|1a|U|793
9B00|1|1a|A|794
9B00|1|1a|C|795
9B00|1|1a|C|796
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1k
- 30S ribosomal protein S11
- Chain 1v
- MF-mRNA
- Chain 1x
- Transfer RNA; tRNA
- Chain 1y
- Transfer RNA; tRNA
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