HL_9B00_221

3D structure

PDB id

9B00 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAGGGAG

Length

7 nucleotides

Bulged bases

9B00|1|2y|G|15, 9B00|1|2y|G|18, 9B00|1|2y|G|19

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B00_221 not in the Motif Atlas

Homologous match to HL_6ORD_035

Geometric discrepancy: 0.4503

The information below is about HL_6ORD_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07951.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

9B00|1|2y|C|13
9B00|1|2y|A|14
9B00|1|2y|G|15
9B00|1|2y|G|18
9B00|1|2y|G|19
9B00|1|2y|A|21
9B00|1|2y|G|22

Current chains

Chain 2y

A-site and E-site Deacylated tRNAphe

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA