HL_9B0F_031

3D structure

PDB id

9B0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class3 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

9B0F|1|L5|U|1980, 9B0F|1|L5|A|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0F_031 not in the Motif Atlas

Homologous match to HL_8CRE_026

Geometric discrepancy: 0.2897

The information below is about HL_8CRE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9B0F|1|L5|C|1978
9B0F|1|L5|A|1979
9B0F|1|L5|U|1980
9B0F|1|L5|G|1981
9B0F|1|L5|G|1982
9B0F|1|L5|A|1983
9B0F|1|L5|A|1984
9B0F|1|L5|G|1985
9B0F|1|L5|U|1986
9B0F|1|L5|C|1987
9B0F|1|L5|G|1988

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Elongation factor 2

Chain Lt

60S ribosomal protein L12 [Homo sapiens]