HL_9B0H_002
3D structure
- PDB id
- 9B0H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human Hibernating class5 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GACUUUUAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0H_002 not in the Motif Atlas
- Homologous match to HL_6GSL_238
- Geometric discrepancy: 0.4886
- The information below is about HL_6GSL_238
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
9B0H|1|Et|G|30
9B0H|1|Et|A|31
9B0H|1|Et|C|32
9B0H|1|Et|U|33
9B0H|1|Et|U|34
9B0H|1|Et|U|35
9B0H|1|Et|U|36
9B0H|1|Et|A|37
9B0H|1|Et|A|38
9B0H|1|Et|U|39
9B0H|1|Et|C|40
Current chains
- Chain Et
- E site tRNA [Homo sapiens]
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SO
- Small ribosomal subunit protein uS11
- Chain SP
- Small ribosomal subunit protein uS19
- Chain SQ
- Small ribosomal subunit protein uS9
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