HL_9B0H_074

3D structure

PDB id

9B0H (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class5 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9B0H|1|L5|C|5023, 9B0H|1|L5|C|5024, 9B0H|1|L5|U|5026, 9B0H|1|L5|C|5027

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0H_074 not in the Motif Atlas

Homologous match to HL_8CRE_070

Geometric discrepancy: 0.5668

The information below is about HL_8CRE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9B0H|1|L5|C|5021
9B0H|1|L5|U|5022
9B0H|1|L5|C|5023
9B0H|1|L5|C|5024
9B0H|1|L5|C|5025
9B0H|1|L5|U|5026
9B0H|1|L5|C|5027
9B0H|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

Heparin-binding protein HBp15

Chain SI

40S ribosomal protein S8