HL_9B0J_041

3D structure

PDB id

9B0J (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human unrotated hibernating with CCDC124 state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GUUCAGAUCC

Length

10 nucleotides

Bulged bases

9B0J|1|L5|U|2530, 9B0J|1|L5|C|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0J_041 not in the Motif Atlas

Homologous match to HL_8CRE_034

Geometric discrepancy: 0.0951

The information below is about HL_8CRE_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9B0J|1|L5|G|2523
9B0J|1|L5|U|2524
9B0J|1|L5|U|2525
9B0J|1|L5|C|2526
9B0J|1|L5|A|2527
9B0J|1|L5|G|2528
9B0J|1|L5|A|2529
9B0J|1|L5|U|2530
9B0J|1|L5|C|2531
9B0J|1|L5|C|2532

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LX

60S ribosomal protein L23a

Chain Lg

60S ribosomal protein L34