HL_9B0N_033

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0N_033 not in the Motif Atlas

Homologous match to HL_8P9A_140

Geometric discrepancy: 0.178

The information below is about HL_8P9A_140

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9B0N|1|L5|U|2006
9B0N|1|L5|G|2007
9B0N|1|L5|U|2008
9B0N|1|L5|A|2009
9B0N|1|L5|A|2010
9B0N|1|L5|C|2011
9B0N|1|L5|A|2012
9B0N|1|L5|A|2013

Current chains

Chain L5

28S rRNA

Nearby chains

Chain AT

Transfer RNA; tRNA

Chain Lm

Large ribosomal subunit protein eL40

Chain Ls

60S acidic ribosomal protein P0

Chain Lt

60S ribosomal protein L12