HL_9B0N_090

3D structure

PDB id

9B0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Post-eEF1A-AT-P state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GUUGAUCCUGC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0N_090 not in the Motif Atlas

Homologous match to HL_8CRE_191

Geometric discrepancy: 0.0819

The information below is about HL_8CRE_191

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9B0N|1|S2|G|7
9B0N|1|S2|U|8
9B0N|1|S2|U|9
9B0N|1|S2|G|10
9B0N|1|S2|A|11
9B0N|1|S2|U|12
9B0N|1|S2|C|13
9B0N|1|S2|C|14
9B0N|1|S2|U|15
9B0N|1|S2|G|16
9B0N|1|S2|C|17

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S2

Chain SX

40S ribosomal protein S23