HL_9B0P_008

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

9B0P|1|L5|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0P_008 not in the Motif Atlas

Geometric match to HL_1P6V_004

Geometric discrepancy: 0.309

The information below is about HL_1P6V_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9B0P|1|L5|U|204
9B0P|1|L5|C|205
9B0P|1|L5|U|206
9B0P|1|L5|G|207
9B0P|1|L5|A|208
9B0P|1|L5|U|209
9B0P|1|L5|C|210
9B0P|1|L5|G|211

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32