HL_9B0P_024

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

9B0P|1|L5|U|1596, 9B0P|1|L5|A|1600, 9B0P|1|L5|A|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0P_024 not in the Motif Atlas

Homologous match to HL_8P9A_132

Geometric discrepancy: 0.0769

The information below is about HL_8P9A_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50204.1

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

11

Unit IDs

9B0P|1|L5|A|1593
9B0P|1|L5|C|1594
9B0P|1|L5|G|1595
9B0P|1|L5|U|1596
9B0P|1|L5|G|1597
9B0P|1|L5|C|1598
9B0P|1|L5|A|1599
9B0P|1|L5|A|1600
9B0P|1|L5|A|1601
9B0P|1|L5|U|1602

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37