HL_9B0P_026

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9B0P|1|L5|C|1676, 9B0P|1|L5|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0P_026 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.3056

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

9B0P|1|L5|C|1675
9B0P|1|L5|C|1676
9B0P|1|L5|U|1677
9B0P|1|L5|C|1678
9B0P|1|L5|A|1679
9B0P|1|L5|G|1680

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain La

60S ribosomal protein L27a

Chain Lb

Large ribosomal subunit protein eL29

Chain Lo

60S ribosomal protein L36a