HL_9B0P_035

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

9B0P|1|L5|G|2421, 9B0P|1|L5|U|2425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0P_035 not in the Motif Atlas

Homologous match to HL_8P9A_144

Geometric discrepancy: 0.1654

The information below is about HL_8P9A_144

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9B0P|1|L5|A|2420
9B0P|1|L5|G|2421
9B0P|1|L5|C|2422
9B0P|1|L5|A|2423
9B0P|1|L5|G|2424
9B0P|1|L5|U|2425
9B0P|1|L5|U|2426

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ll

60S ribosomal protein L39