HL_9B0P_073

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

9B0P|1|L5|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0P_073 not in the Motif Atlas

Homologous match to HL_8CRE_069

Geometric discrepancy: 0.098

The information below is about HL_8CRE_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9B0P|1|L5|G|4975
9B0P|1|L5|U|4976
9B0P|1|L5|A|4977
9B0P|1|L5|G|4978
9B0P|1|L5|A|4979
9B0P|1|L5|C|4980
9B0P|1|L5|G|4981
9B0P|1|L5|A|4982
9B0P|1|L5|C|4983

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17