HL_9B0P_095

3D structure

PDB id

9B0P (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human Hibernating class1 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0P_095 not in the Motif Atlas

Homologous match to HL_8CRE_205

Geometric discrepancy: 0.0971

The information below is about HL_8CRE_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9B0P|1|S2|C|618
9B0P|1|S2|A|619
9B0P|1|S2|G|620
9B0P|1|S2|C|621
9B0P|1|S2|C|622
9B0P|1|S2|G|623

Current chains

Chain S2

18S rRNA

Nearby chains

Chain CD

Serbp1

Chain SX

40S ribosomal protein S23