HL_9B0Q_062

3D structure

PDB id

9B0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-back di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

9B0Q|1|L5|A|4214, 9B0Q|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0Q_062 not in the Motif Atlas

Homologous match to HL_8CRE_054

Geometric discrepancy: 0.1269

The information below is about HL_8CRE_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

9B0Q|1|L5|U|4210
9B0Q|1|L5|C|4211
9B0Q|1|L5|A|4212
9B0Q|1|L5|A|4213
9B0Q|1|L5|A|4214
9B0Q|1|L5|C|4215
9B0Q|1|L5|G|4216
9B0Q|1|L5|G|4217
9B0Q|1|L5|U|4218
9B0Q|1|L5|A|4219
9B0Q|1|L5|A|4220
9B0Q|1|L5|C|4221
9B0Q|1|L5|G|4222

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LI

Ribosomal protein uL16-like

Chain LT

60S ribosomal protein L21

Chain Lb

Large ribosomal subunit protein eL29