HL_9B0Q_116

3D structure

PDB id

9B0Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-back di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

9B0Q|1|S2|U|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0Q_116 not in the Motif Atlas

Homologous match to HL_8P9A_218

Geometric discrepancy: 0.1568

The information below is about HL_8P9A_218

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

9B0Q|1|S2|G|1366
9B0Q|1|S2|U|1367
9B0Q|1|S2|U|1368
9B0Q|1|S2|A|1369
9B0Q|1|S2|A|1370
9B0Q|1|S2|U|1371
9B0Q|1|S2|U|1372
9B0Q|1|S2|C|1373

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SR

40S ribosomal protein S17