HL_9B0S_003

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGCUGUAG

Length

9 nucleotides

Bulged bases

9B0S|1|Et|C|16, 9B0S|1|Et|U|18, 9B0S|1|Et|G|19, 9B0S|1|Et|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_003 not in the Motif Atlas

Homologous match to HL_4YYE_001

Geometric discrepancy: 0.222

The information below is about HL_4YYE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0S|1|Et|C|13
9B0S|1|Et|A|14
9B0S|1|Et|G|15
9B0S|1|Et|C|16
9B0S|1|Et|U|18
9B0S|1|Et|G|19
9B0S|1|Et|U|20
9B0S|1|Et|A|21
9B0S|1|Et|G|22

Current chains

Chain Et

P/E site tRNA [Homo sapiens]

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA