9B0S Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9B0S_001 | 1/AT/31:41 | No text annotation | homologous HL_4QEI_002 NA | |
| HL_9B0S_006 | 1/L5/37:44 | No text annotation | homologous HL_8P9A_113 HL_48677.1 | |
| HL_9B0S_007 | 1/L5/68:73 | No text annotation | homologous HL_8P9A_114 HL_51020.1 | |
| HL_9B0S_008 | 1/L5/89:95 | No text annotation | homologous HL_8CRE_003 NA | |
| HL_9B0S_010 | 1/L5/204:211 | T-loop with 2 bulged bases not stacked | geometric HL_1P6V_004 NA | |
| HL_9B0S_011 | 1/L5/222:226 | No text annotation | geometric HL_8K0Y_001 HL_75660.6 | |
| HL_9B0S_012 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_8CRE_007 NA | |
| HL_9B0S_013 | 1/L5/289:298 | T-loop related | homologous HL_8CRE_008 NA | |
| HL_9B0S_014 | 1/L5/314:323 | No text annotation | homologous HL_8CRE_009 NA | |
| HL_9B0S_015 | 1/L5/368:373 | GNRA | homologous HL_8CRE_010 NA | |
| HL_9B0S_016 | 1/L5/393:398 | GNRA | homologous HL_8CRE_011 NA | |
| HL_9B0S_019 | 1/L5/1173:1188 | No text annotation | ||
| HL_9B0S_021 | 1/L5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_9B0S_022 | 1/L5/1364:1373 | No text annotation | ||
| HL_9B0S_023 | 1/L5/1389:1394 | GNRA | homologous HL_8CRE_015 NA | |
| HL_9B0S_026 | 1/L5/1480:1484 | Mini UNCG | geometric HL_8XZL_001 HL_12111.1 | |
| HL_9B0S_027 | 1/L5/1561:1566 | GNRA | homologous HL_8CRE_018 NA | |
| HL_9B0S_028 | 1/L5/1593:1602 | No text annotation | homologous HL_8CRE_019 NA | |
| HL_9B0S_029 | 1/L5/1627:1635 | No text annotation | homologous HL_8P9A_133 HL_79004.1 | |
| HL_9B0S_030 | 1/L5/1675:1680 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_9B0S_032 | 1/L5/1816:1823 | T-loop related | homologous HL_8CRE_023 NA | |
| HL_9B0S_033 | 1/L5/1864:1870 | GNRA | homologous HL_8CRE_024 NA | |
| HL_9B0S_034 | 1/L5/1886:1893 | No text annotation | homologous HL_8CRE_025 NA | |
| HL_9B0S_037 | 1/L5/2110:2252 | No text annotation | ||
| HL_9B0S_038 | 1/L5/2317:2322 | GNRA | homologous HL_8CRE_029 NA | |
| HL_9B0S_039 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 NA | |
| HL_9B0S_040 | 1/L5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8CRE_031 NA | |
| HL_9B0S_041 | 1/L5/2458:2463 | GNRA variation | homologous HL_8CRE_032 NA | |
| HL_9B0S_043 | 1/L5/2523:2532 | No text annotation | homologous HL_8P9A_146 HL_77449.1 | |
| HL_9B0S_045 | 1/L5/2578:2583 | GNRA | homologous HL_8CRE_035 NA | |
| HL_9B0S_046 | 1/L5/2624:2632 | Pseudoknot geometry | homologous HL_8P9A_148 HL_68642.1 | |
| HL_9B0S_047 | 1/L5/2664:2670 | No text annotation | homologous HL_8P9A_149 HL_97067.1 | |
| HL_9B0S_049 | 1/L5/2738:2742 | No text annotation | homologous HL_8CRE_039 NA | |
| HL_9B0S_050 | 1/L5/2792:2799 | No text annotation | homologous HL_8P9A_152 HL_28592.1 | |
| HL_9B0S_051 | 1/L5/2810:2816 | GNRA | homologous HL_8P9A_153 HL_34789.1 | |
| HL_9B0S_052 | 1/L5/2872:2877 | UNCG | homologous HL_8P9A_154 HL_61337.1 | |
| HL_9B0S_055 | 1/L5/3614:3618 | No text annotation | homologous HL_8CRE_043 NA | |
| HL_9B0S_056 | 1/L5/3639:3649 | No text annotation | homologous HL_8CRE_044 NA | |
| HL_9B0S_057 | 1/L5/3668:3674 | GNRA | homologous HL_8CRE_045 NA | |
| HL_9B0S_058 | 1/L5/3724:3729 | GNRA | homologous HL_8P9A_159 HL_34789.1 | |
| HL_9B0S_061 | 1/L5/3796:3804 | No text annotation | homologous HL_8CRE_048 NA | |
| HL_9B0S_062 | 1/L5/3873:3882 | No text annotation | homologous HL_8CRE_049 NA | |
| HL_9B0S_063 | 1/L5/3953:4059 | No text annotation | ||
| HL_9B0S_066 | 1/L5/4193:4201 | No text annotation | homologous HL_8CRE_053 NA | |
| HL_9B0S_067 | 1/L5/4210:4222 | No text annotation | homologous HL_8CRE_054 NA | |
| HL_9B0S_068 | 1/L5/4250:4258 | No text annotation | homologous HL_8P9A_167 HL_02452.1 | |
| HL_9B0S_069 | 1/L5/4270:4277 | Pseudoknot geometry | homologous HL_8CRE_056 NA | |
| HL_9B0S_070 | 1/L5/4301:4309 | No text annotation | homologous HL_8CRE_057 NA | |
| HL_9B0S_071 | 1/L5/4321:4326 | GNRA | homologous HL_8CRE_058 NA | |
| HL_9B0S_072 | 1/L5/4352:4362 | No text annotation | geometric HL_7JRT_001 NA | |
| HL_9B0S_073 | 1/L5/4417:4425 | No text annotation | homologous HL_8P9A_172 HL_52011.1 | |
| HL_9B0S_074 | 1/L5/4474:4481 | GNRA variation | homologous HL_8P9A_173 HL_46665.1 | |
| HL_9B0S_075 | 1/L5/4497:4503 | No text annotation | homologous HL_8P9A_174 HL_48677.1 | |
| HL_9B0S_076 | 1/L5/4540:4545 | GNRA | homologous HL_8P9A_175 HL_34789.1 | |
| HL_9B0S_078 | 1/L5/4646:4651 | No text annotation | homologous HL_8CRE_065 NA | |
| HL_9B0S_079 | 1/L5/4688:4702 | No text annotation | homologous HL_8CRE_066 NA | |
| HL_9B0S_081 | 1/L5/4907:4914 | No text annotation | geometric HL_8P9A_180 HL_31089.1 | |
| HL_9B0S_082 | 1/L5/4975:4983 | No text annotation | homologous HL_8CRE_069 NA | |
| HL_9B0S_084 | 1/L7/32:45 | No text annotation | geometric HL_8C3A_228 NA | |
| HL_9B0S_085 | 1/L7/36:41 | No text annotation | homologous HL_8OI5_069 HL_59381.1 | |
| HL_9B0S_086 | 1/L7/86:91 | GNRA | homologous HL_8P9A_185 HL_34789.1 | |
| HL_9B0S_087 | 1/L8/47:56 | No text annotation | homologous HL_8CRE_074 NA | |
| HL_9B0S_088 | 1/L8/68:90 | No text annotation | ||
| HL_9B0S_089 | 1/L8/107:112 | No text annotation | homologous HL_8P9A_188 HL_13184.1 | |
| HL_9B0S_091 | 1/Pt/12:23 | No text annotation | homologous HL_4JYZ_001 NA | |
| HL_9B0S_092 | 1/Pt/31:39 | tRNA anticodon loop | homologous HL_5E81_212 NA | |
| HL_9B0S_094 | 1/S2/7:17 | No text annotation | homologous HL_8CRE_191 HL_31940.1 | |
| HL_9B0S_096 | 1/S2/156:162 | GNRA related | homologous HL_8CRE_193 HL_34789.1 | |
| HL_9B0S_100 | 1/S2/377:387 | No text annotation | ||
| HL_9B0S_101 | 1/S2/416:421 | GNRA variation | homologous HL_8CRE_199 HL_34789.1 | |
| HL_9B0S_102 | 1/S2/441:452 | No text annotation | homologous HL_8CRE_200 HL_86432.1 | |
| HL_9B0S_109 | 1/S2/820:828 | No text annotation | homologous HL_8CRE_207 HL_11974.1 | |
| HL_9B0S_112 | 1/S2/957:966 | No text annotation | homologous HL_8CRE_210 HL_38491.1 | |
| HL_9B0S_113 | 1/S2/994:999 | GNRA | homologous HL_8P9A_210 HL_34789.1 | |
| HL_9B0S_114 | 1/S2/1054:1064 | No text annotation | homologous HL_8P9A_211 HL_38491.1 | |
| HL_9B0S_116 | 1/S2/1141:1146 | GNRA | homologous HL_8P9A_213 HL_34789.1 | |
| HL_9B0S_117 | 1/S2/1178:1183 | GNRA | homologous HL_8CRE_215 HL_34789.1 | |
| HL_9B0S_118 | 1/S2/1245:1254 | No text annotation | homologous HL_8P9A_215 HL_97521.1 | |
| HL_9B0S_119 | 1/S2/1295:1304 | GNRA wlth extra near cWW | homologous HL_8CRE_217 HL_45359.1 | |
| HL_9B0S_120 | 1/S2/1353:1358 | GNRA variation | geometric HL_5J7L_180 NA | |
| HL_9B0S_125 | 1/S2/1614:1625 | No text annotation | homologous HL_8P9A_222 HL_50951.1 | |
| HL_9B0S_126 | 1/S2/1658:1666 | T-loop with 1 bulged base | homologous HL_8CRE_224 HL_61418.1 | |
| HL_9B0S_128 | 1/S2/1847:1852 | GNRA variation | homologous HL_8CRE_225 HL_34789.1 | |
| HL_9B0S_129 | 1/aP/12:23 | No text annotation | geometric HL_1F7U_001 HL_55043.1 | |
| HL_9B0S_130 | 1/aP/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 NA | |
| HL_9B0S_131 | 1/aP/53:61 | T-loop with 2 stacked bulged bases | homologous HL_4YYE_003 HL_33597.1 | |
| HL_9B0S_132 | 1/l5/37:44 | No text annotation | homologous HL_8CRE_001 NA | |
| HL_9B0S_133 | 1/l5/68:73 | No text annotation | homologous HL_8CRE_002 NA | |
| HL_9B0S_134 | 1/l5/89:95 | No text annotation | homologous HL_8CRE_003 NA | |
| HL_9B0S_135 | 1/l5/131:137 | No text annotation | ||
| HL_9B0S_136 | 1/l5/204:211 | T-loop with 1 bulged base | homologous HL_8P9A_117 HL_13999.1 | |
| HL_9B0S_137 | 1/l5/222:226 | No text annotation | homologous HL_8CRE_006 NA | |
| HL_9B0S_138 | 1/l5/230:238 | T-loop with unstacked turn | homologous HL_8CRE_007 NA | |
| HL_9B0S_139 | 1/l5/289:298 | T-loop related | homologous HL_8CRE_008 NA | |
| HL_9B0S_140 | 1/l5/314:323 | No text annotation | homologous HL_8CRE_009 NA | |
| HL_9B0S_141 | 1/l5/368:373 | GNRA | homologous HL_8CRE_010 NA | |
| HL_9B0S_142 | 1/l5/393:398 | GNRA | homologous HL_8CRE_011 NA | |
| HL_9B0S_145 | 1/l5/1173:1188 | No text annotation | ||
| HL_9B0S_147 | 1/l5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_013 NA | |
| HL_9B0S_148 | 1/l5/1364:1373 | No text annotation | ||
| HL_9B0S_149 | 1/l5/1389:1394 | GNRA | homologous HL_8P9A_128 HL_34789.1 | |
| HL_9B0S_151 | 1/l5/1436:1448 | No text annotation | ||
| HL_9B0S_152 | 1/l5/1480:1484 | No text annotation | ||
| HL_9B0S_153 | 1/l5/1561:1566 | GNRA | homologous HL_8P9A_131 HL_34789.1 | |
| HL_9B0S_154 | 1/l5/1593:1602 | No text annotation | homologous HL_8CRE_019 NA | |
| HL_9B0S_155 | 1/l5/1627:1635 | No text annotation | homologous HL_8P9A_133 HL_79004.1 | |
| HL_9B0S_156 | 1/l5/1675:1680 | No text annotation | homologous HL_8P9A_134 HL_27530.1 | |
| HL_9B0S_158 | 1/l5/1816:1823 | T-loop related | homologous HL_8CRE_023 NA | |
| HL_9B0S_159 | 1/l5/1864:1870 | GNRA | homologous HL_8CRE_024 NA | |
| HL_9B0S_160 | 1/l5/1886:1893 | No text annotation | homologous HL_8P9A_138 HL_47171.1 | |
| HL_9B0S_161 | 1/l5/1978:1988 | No text annotation | homologous HL_8CRE_026 NA | |
| HL_9B0S_162 | 1/l5/2006:2013 | GNRA wlth tandem sheared | homologous HL_8CRE_027 NA | |
| HL_9B0S_163 | 1/l5/2087:2270 | No text annotation | ||
| HL_9B0S_164 | 1/l5/2317:2322 | GNRA | homologous HL_8CRE_029 NA | |
| HL_9B0S_165 | 1/l5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8CRE_030 NA | |
| HL_9B0S_166 | 1/l5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_8CRE_031 NA | |
| HL_9B0S_167 | 1/l5/2458:2463 | GNRA variation | homologous HL_8CRE_032 NA | |
| HL_9B0S_169 | 1/l5/2523:2532 | No text annotation | homologous HL_8P9A_146 HL_77449.1 | |
| HL_9B0S_171 | 1/l5/2578:2583 | GNRA | homologous HL_8CRE_035 NA | |
| HL_9B0S_172 | 1/l5/2624:2632 | Pseudoknot geometry | homologous HL_8P9A_148 HL_68642.1 | |
| HL_9B0S_173 | 1/l5/2664:2670 | Other HL | geometric HL_4V9F_039 HL_67772.1 | |
| HL_9B0S_174 | 1/l5/2704:2712 | No text annotation | ||
| HL_9B0S_175 | 1/l5/2738:2742 | No text annotation | homologous HL_8CRE_039 NA | |
| HL_9B0S_176 | 1/l5/2792:2799 | No text annotation | homologous HL_8CRE_040 NA | |
| HL_9B0S_177 | 1/l5/2810:2816 | GNRA | homologous HL_8P9A_153 HL_34789.1 | |
| HL_9B0S_178 | 1/l5/2872:2877 | UNCG | homologous HL_8P9A_154 HL_61337.1 | |
| HL_9B0S_181 | 1/l5/3614:3618 | No text annotation | homologous HL_8CRE_043 NA | |
| HL_9B0S_182 | 1/l5/3639:3649 | No text annotation | homologous HL_8P9A_157 HL_87681.1 | |
| HL_9B0S_183 | 1/l5/3668:3674 | GNRA | homologous HL_8CRE_045 NA | |
| HL_9B0S_184 | 1/l5/3724:3729 | GNRA | homologous HL_8CRE_046 NA | |
| HL_9B0S_185 | 1/l5/3757:3767 | No text annotation | homologous HL_8CRE_047 NA | |
| HL_9B0S_186 | 1/l5/3773:3775 | No text annotation | ||
| HL_9B0S_187 | 1/l5/3796:3804 | No text annotation | homologous HL_8CRE_048 NA | |
| HL_9B0S_188 | 1/l5/3873:3882 | No text annotation | homologous HL_8P9A_162 HL_78372.1 | |
| HL_9B0S_189 | 1/l5/3946:4067 | No text annotation | ||
| HL_9B0S_192 | 1/l5/4193:4201 | No text annotation | homologous HL_8P9A_165 HL_11974.1 | |
| HL_9B0S_193 | 1/l5/4210:4222 | No text annotation | homologous HL_8P9A_166 HL_02042.1 | |
| HL_9B0S_194 | 1/l5/4250:4258 | No text annotation | homologous HL_8CRE_055 NA | |
| HL_9B0S_195 | 1/l5/4270:4277 | Pseudoknot geometry | homologous HL_8CRE_056 NA | |
| HL_9B0S_196 | 1/l5/4301:4309 | No text annotation | homologous HL_8CRE_057 NA | |
| HL_9B0S_197 | 1/l5/4321:4326 | GNRA | homologous HL_8CRE_058 NA | |
| HL_9B0S_198 | 1/l5/4352:4362 | No text annotation | geometric HL_7JRT_001 NA | |
| HL_9B0S_199 | 1/l5/4417:4425 | No text annotation | homologous HL_8P9A_172 HL_52011.1 | |
| HL_9B0S_200 | 1/l5/4474:4481 | GNRA variation | homologous HL_8P9A_173 HL_46665.1 | |
| HL_9B0S_201 | 1/l5/4497:4503 | No text annotation | homologous HL_8P9A_174 HL_48677.1 | |
| HL_9B0S_202 | 1/l5/4540:4545 | GNRA | homologous HL_8P9A_175 HL_34789.1 | |
| HL_9B0S_203 | 1/l5/4603:4608 | GNRA | homologous HL_8CRE_064 NA | |
| HL_9B0S_204 | 1/l5/4646:4651 | No text annotation | homologous HL_8CRE_065 NA | |
| HL_9B0S_205 | 1/l5/4688:4702 | No text annotation | homologous HL_8CRE_066 NA | |
| HL_9B0S_207 | 1/l5/4907:4914 | No text annotation | geometric HL_8P9A_180 HL_31089.1 | |
| HL_9B0S_208 | 1/l5/4975:4983 | No text annotation | homologous HL_8CRE_069 NA | |
| HL_9B0S_209 | 1/l5/5021:5028 | No text annotation | homologous HL_8CRE_070 NA | |
| HL_9B0S_210 | 1/l7/32:45 | No text annotation | geometric HL_8C3A_228 NA | |
| HL_9B0S_211 | 1/l7/36:41 | No text annotation | homologous HL_8OI5_069 HL_59381.1 | |
| HL_9B0S_212 | 1/l7/86:91 | GNRA | homologous HL_8OI5_070 HL_34789.1 | |
| HL_9B0S_213 | 1/l8/47:56 | No text annotation | homologous HL_8CRE_074 NA | |
| HL_9B0S_214 | 1/l8/68:90 | No text annotation | ||
| HL_9B0S_215 | 1/l8/107:112 | No text annotation | homologous HL_8P9A_188 HL_13184.1 | |
| HL_9B0S_216 | 1/l8/122:128 | No text annotation | ||
| HL_9B0S_219 | 1/pE/53:61 | T-loop with 2 stacked bulged bases | homologous HL_1H3E_004 NA | |
| HL_9B0S_220 | 1/s2/7:17 | No text annotation | homologous HL_8CRE_191 HL_31940.1 | |
| HL_9B0S_221 | 1/s2/69:80 | No text annotation | ||
| HL_9B0S_222 | 1/s2/156:162 | GNRA related | homologous HL_8CRE_193 HL_34789.1 | |
| HL_9B0S_224 | 1/s2/288:295 | T-loop with 1 bulged base | homologous HL_8CRE_196 HL_67772.1 | |
| HL_9B0S_226 | 1/s2/377:387 | No text annotation | ||
| HL_9B0S_227 | 1/s2/416:421 | GNRA variation | homologous HL_8CRE_199 HL_34789.1 | |
| HL_9B0S_228 | 1/s2/441:452 | No text annotation | homologous HL_8CRE_200 HL_86432.1 | |
| HL_9B0S_229 | 1/s2/462:467 | UNCG | homologous HL_8P9A_200 HL_61337.1 | |
| HL_9B0S_230 | 1/s2/498:504 | No text annotation | homologous HL_8CRE_202 HL_89167.1 | |
| HL_9B0S_232 | 1/s2/569:581 | No text annotation | homologous HL_8P9A_203 HL_68749.1 | |
| HL_9B0S_233 | 1/s2/618:623 | No text annotation | homologous HL_8CRE_205 HL_93535.2 | |
| HL_9B0S_235 | 1/s2/820:828 | No text annotation | homologous HL_8CRE_207 HL_11974.1 | |
| HL_9B0S_238 | 1/s2/957:966 | No text annotation | homologous HL_8CRE_210 HL_38491.1 | |
| HL_9B0S_239 | 1/s2/994:999 | GNRA | homologous HL_8P9A_210 HL_34789.1 | |
| HL_9B0S_240 | 1/s2/1054:1064 | No text annotation | homologous HL_8CRE_212 HL_38491.1 | |
| HL_9B0S_241 | 1/s2/1113:1120 | No text annotation | ||
| HL_9B0S_242 | 1/s2/1141:1146 | GNRA | homologous HL_8P9A_213 HL_34789.1 | |
| HL_9B0S_243 | 1/s2/1178:1183 | GNRA | homologous HL_8CRE_215 HL_34789.1 | |
| HL_9B0S_244 | 1/s2/1245:1254 | No text annotation | homologous HL_8P9A_215 HL_97521.1 | |
| HL_9B0S_245 | 1/s2/1295:1304 | GNRA wlth extra near cWW | homologous HL_8CRE_217 HL_45359.1 | |
| HL_9B0S_246 | 1/s2/1353:1358 | GNRA | homologous HL_8P9A_217 HL_34789.1 | |
| HL_9B0S_247 | 1/s2/1366:1373 | No text annotation | ||
| HL_9B0S_248 | 1/s2/1416:1424 | No text annotation | ||
| HL_9B0S_249 | 1/s2/1460:1466 | No text annotation | homologous HL_8CRE_221 HL_76371.1 | |
| HL_9B0S_250 | 1/s2/1565:1570 | GNRA | homologous HL_8CRE_222 HL_34789.1 | |
| HL_9B0S_251 | 1/s2/1614:1625 | No text annotation | homologous HL_8P9A_222 HL_50951.1 | |
| HL_9B0S_252 | 1/s2/1658:1666 | T-loop with 1 bulged base | homologous HL_8CRE_224 HL_61418.1 | |
| HL_9B0S_254 | 1/s2/1847:1852 | GNRA variation | homologous HL_8CRE_225 HL_34789.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9B0S_002 | T-loop with 2 stacked bulged bases | ||
| HL_9B0S_003 | No text annotation | ||
| HL_9B0S_004 | tRNA anticodon loop | ||
| HL_9B0S_005 | T-loop with 2 stacked bulged bases | ||
| HL_9B0S_009 | No text annotation | ||
| HL_9B0S_017 | No text annotation | ||
| HL_9B0S_018 | No text annotation | ||
| HL_9B0S_020 | No text annotation | ||
| HL_9B0S_024 | No text annotation | ||
| HL_9B0S_025 | No text annotation | ||
| HL_9B0S_031 | No text annotation | ||
| HL_9B0S_035 | No text annotation | ||
| HL_9B0S_036 | GNRA wlth tandem sheared | ||
| HL_9B0S_042 | No text annotation | ||
| HL_9B0S_044 | GNRA | ||
| HL_9B0S_048 | No text annotation | ||
| HL_9B0S_053 | No text annotation | ||
| HL_9B0S_054 | No text annotation | ||
| HL_9B0S_059 | No text annotation | ||
| HL_9B0S_060 | No text annotation | ||
| HL_9B0S_064 | No text annotation | ||
| HL_9B0S_065 | No text annotation | ||
| HL_9B0S_077 | GNRA | ||
| HL_9B0S_080 | No text annotation | ||
| HL_9B0S_083 | No text annotation | ||
| HL_9B0S_090 | No text annotation | ||
| HL_9B0S_093 | T-loop with 2 stacked bulged bases | ||
| HL_9B0S_095 | No text annotation | ||
| HL_9B0S_097 | No text annotation | ||
| HL_9B0S_098 | T-loop with 1 bulged base | ||
| HL_9B0S_099 | No text annotation | ||
| HL_9B0S_103 | UNCG | ||
| HL_9B0S_104 | No text annotation | ||
| HL_9B0S_105 | No text annotation | ||
| HL_9B0S_106 | No text annotation | ||
| HL_9B0S_107 | No text annotation | ||
| HL_9B0S_108 | No text annotation | ||
| HL_9B0S_110 | No text annotation | ||
| HL_9B0S_111 | No text annotation | ||
| HL_9B0S_115 | No text annotation | ||
| HL_9B0S_121 | T-loop related | ||
| HL_9B0S_122 | No text annotation | ||
| HL_9B0S_123 | No text annotation | ||
| HL_9B0S_124 | GNRA | ||
| HL_9B0S_127 | No text annotation | ||
| HL_9B0S_143 | No text annotation | ||
| HL_9B0S_144 | No text annotation | ||
| HL_9B0S_146 | No text annotation | ||
| HL_9B0S_150 | No text annotation | ||
| HL_9B0S_157 | No text annotation | ||
| HL_9B0S_168 | No text annotation | ||
| HL_9B0S_170 | GNRA | ||
| HL_9B0S_179 | No text annotation | ||
| HL_9B0S_180 | No text annotation | ||
| HL_9B0S_190 | No text annotation | ||
| HL_9B0S_191 | No text annotation | ||
| HL_9B0S_206 | No text annotation | ||
| HL_9B0S_217 | tRNA D-loop | ||
| HL_9B0S_218 | tRNA anticodon loop | ||
| HL_9B0S_223 | No text annotation | ||
| HL_9B0S_225 | No text annotation | ||
| HL_9B0S_231 | No text annotation | ||
| HL_9B0S_234 | No text annotation | ||
| HL_9B0S_236 | No text annotation | ||
| HL_9B0S_237 | No text annotation | ||
| HL_9B0S_253 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9B0S_002 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | homologous IL_8P9A_231 IL_05642.1 | |
| IL_9B0S_003 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8P9A_232 IL_97561.1 | |
| IL_9B0S_004 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_9B0S_005 | 1/L5/26:27, 1/L5/55:57 | Single stack bend | homologous IL_8CRE_004 NA | |
| IL_9B0S_006 | 1/L5/30:37, 1/L5/44:52 | tSH-tHW-tHH-tHS | homologous IL_8CRE_005 NA | |
| IL_9B0S_007 | 1/L5/81:88, 1/L5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8CRE_006 NA | |
| IL_9B0S_008 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_9B0S_009 | 1/L5/125:126, 1/L5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9B0S_010 | 1/L5/169:174, 1/L5/262:266 | No text annotation | ||
| IL_9B0S_013 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9B0S_014 | 1/L5/199:201, 1/L5/214:215 | No text annotation | homologous IL_8CRE_013 NA | |
| IL_9B0S_015 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform | geometric IL_9DFE_073 IL_24264.1 | |
| IL_9B0S_016 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_8CRE_014 NA | |
| IL_9B0S_017 | 1/L5/387:390, 1/L5/401:414 | No text annotation | geometric IL_8P9A_243 IL_44923.1 | |
| IL_9B0S_018 | 1/L5/415:421, 1/L8/13:19 | No text annotation | homologous IL_8CRE_016 NA | |
| IL_9B0S_019 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | ||
| IL_9B0S_029 | 1/L5/508:510, 1/L5/649:650 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
| IL_9B0S_031 | 1/L5/709:710, 1/L5/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_28408.1 | |
| IL_9B0S_032 | 1/L5/723:724, 1/L5/942:945 | Multiple bulged bases | geometric IL_1R3E_001 IL_44609.1 | |
| IL_9B0S_033 | 1/L5/727:731, 1/L5/938:939 | No text annotation | ||
| IL_9B0S_034 | 1/L5/732:735, 1/L5/928:937 | No text annotation | ||
| IL_9B0S_037 | 1/L5/745:752, 1/L5/911:919 | No text annotation | geometric IL_8P9A_248 IL_25001.1 | |
| IL_9B0S_039 | 1/L5/1073:1074, 1/L5/1237:1239 | Single bulged A | geometric IL_4R4V_003 IL_14190.1 | |
| IL_9B0S_048 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_9B0S_049 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | ||
| IL_9B0S_050 | 1/L5/1360:1361, 1/L5/1376:1379 | Single bulged A | geometric IL_4V9F_090 IL_73464.1 | |
| IL_9B0S_051 | 1/L5/1425:1429, 1/L5/1455:1460 | No text annotation | geometric IL_3BBM_001 IL_47352.1 | |
| IL_9B0S_052 | 1/L5/1431:1434, 1/L5/1450:1453 | Double sheared | geometric IL_4LFB_060 IL_58355.1 | |
| IL_9B0S_053 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A | homologous IL_8P9A_252 IL_14190.1 | |
| IL_9B0S_054 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_9B0S_055 | 1/L5/1479:1480, 1/L5/1484:1486 | No text annotation | ||
| IL_9B0S_056 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.1 | |
| IL_9B0S_057 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_9B0S_058 | 1/L5/1545:1546, 1/L5/1612:1614 | Single bulged A | homologous IL_8CRE_031 NA | |
| IL_9B0S_059 | 1/L5/1550:1551, 1/L5/1576:1578 | No text annotation | homologous IL_8CRE_032 NA | |
| IL_9B0S_060 | 1/L5/1551:1555, 1/L5/1572:1576 | Triple sheared | homologous IL_8CRE_033 NA | |
| IL_9B0S_061 | 1/L5/1586:1589, 1/L5/1605:1607 | No text annotation | homologous IL_8CRE_034 NA | |
| IL_9B0S_062 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | homologous IL_8P9A_260 IL_97561.1 | |
| IL_9B0S_063 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation | homologous IL_8CRE_036 NA | |
| IL_9B0S_064 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_71625.1 | |
| IL_9B0S_065 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | ||
| IL_9B0S_066 | 1/L5/1694:1721, 1/L5/1841:1842 | No text annotation | ||
| IL_9B0S_067 | 1/L5/1723:1725, 1/L5/1838:1839 | No text annotation | homologous IL_8CRE_040 NA | |
| IL_9B0S_068 | 1/L5/1732:1737, 1/L5/1792:1797 | No text annotation | ||
| IL_9B0S_069 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform | homologous IL_8CRE_042 NA | |
| IL_9B0S_070 | 1/L5/1739:1744, 1/L5/1786:1789 | C-loop with bulged stacked A's | homologous IL_8CRE_043 NA | |
| IL_9B0S_071 | 1/L5/1746:1749, 1/L5/1781:1784 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.1 | |
| IL_9B0S_072 | 1/L5/1749:1751, 1/L5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_01003.1 | |
| IL_9B0S_075 | 1/L5/1814:1816, 1/L5/1823:1824 | Single bulged A | homologous IL_8P9A_273 IL_14190.1 | |
| IL_9B0S_076 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8CRE_049 NA | |
| IL_9B0S_078 | 1/L5/1905:1909, 1/L5/2067:2071 | UAA/GAN | homologous IL_8P9A_276 IL_08938.1 | |
| IL_9B0S_079 | 1/L5/1911:1918, 1/L5/2064:2065 | SSU/LSU pseudoknot | homologous IL_8CRE_052 NA | |
| IL_9B0S_080 | 1/L5/1918:1920, 1/L5/2063:2064 | Single bulged G | geometric IL_8TSV_002 NA | |
| IL_9B0S_081 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation | ||
| IL_9B0S_082 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation | homologous IL_8CRE_054 NA | |
| IL_9B0S_083 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation | homologous IL_8P9A_280 IL_34501.1 | |
| IL_9B0S_084 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U | homologous IL_8P9A_281 IL_97561.1 | |
| IL_9B0S_085 | 1/L5/1957:1965, 1/L5/2022:2026 | Kink-turn | homologous IL_8CRE_057 NA | |
| IL_9B0S_088 | 1/L5/2083:2085, 1/L5/2272:2273 | Single bulged C | geometric IL_4C7O_003 NA | |
| IL_9B0S_089 | 1/L5/2087:2110, 1/L5/2252:2270 | No text annotation | ||
| IL_9B0S_090 | 1/L5/2290:2292, 1/L5/2342:2345 | No text annotation | homologous IL_8CRE_061 NA | |
| IL_9B0S_091 | 1/L5/2299:2301, 1/L5/2334:2335 | Single bulged A | homologous IL_8CRE_062 NA | |
| IL_9B0S_092 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn | homologous IL_8P9A_287 IL_90775.1 | |
| IL_9B0S_093 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A | homologous IL_8P9A_288 IL_14190.1 | |
| IL_9B0S_094 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_9B0S_095 | 1/L5/2415:2419, 1/L5/2427:2429 | C-loop | homologous IL_8CRE_066 NA | |
| IL_9B0S_096 | 1/L5/2446:2450, 1/L5/2509:2514 | UAA/GAN | homologous IL_8CRE_067 NA | |
| IL_9B0S_097 | 1/L5/2477:2479, 1/L5/2499:2500 | No text annotation | ||
| IL_9B0S_099 | 1/L5/2542:2547, 1/L5/2772:2774 | No text annotation | ||
| IL_9B0S_100 | 1/L5/2549:2550, 1/L5/2768:2770 | No text annotation | homologous IL_8CRE_070 NA | |
| IL_9B0S_101 | 1/L5/2589:2593, 1/L5/2752:2756 | Triple sheared | homologous IL_8P9A_295 IL_15190.1 | |
| IL_9B0S_102 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged C | homologous IL_8P9A_297 IL_05642.1 | |
| IL_9B0S_103 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend | homologous IL_8CRE_075 NA | |
| IL_9B0S_104 | 1/L5/2646:2648, 1/L5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_9B0S_105 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_28408.1 | |
| IL_9B0S_106 | 1/L5/2656:2662, 1/L5/2672:2678 | No text annotation | ||
| IL_9B0S_107 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | homologous IL_8CRE_079 NA | |
| IL_9B0S_108 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | homologous IL_8CRE_080 NA | |
| IL_9B0S_109 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.1 | |
| IL_9B0S_110 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | geometric IL_8P9A_305 IL_80252.1 | |
| IL_9B0S_111 | 1/L5/2850:2855, 1/L5/3837:3840 | No text annotation | homologous IL_8P9A_306 IL_28217.1 | |
| IL_9B0S_112 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation | homologous IL_8CRE_084 NA | |
| IL_9B0S_113 | 1/L5/2889:2891, 1/L5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8P9A_308 IL_01003.1 | |
| IL_9B0S_114 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_8CRE_086 NA | |
| IL_9B0S_115 | 1/L5/2901:2905, 1/L5/3589:3598 | No text annotation | ||
| IL_9B0S_117 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A | homologous IL_8P9A_310 IL_14190.1 | |
| IL_9B0S_118 | 1/L5/3660:3665, 1/L5/3677:3684 | No text annotation | homologous IL_8CRE_088 NA | |
| IL_9B0S_119 | 1/L5/3700:3703, 1/L5/3749:3750 | Minor groove platform, major groove intercalation | homologous IL_8CRE_089 NA | |
| IL_9B0S_120 | 1/L5/3704:3705, 1/L5/3745:3748 | No text annotation | homologous IL_8CRE_090 NA | |
| IL_9B0S_121 | 1/L5/3708:3710, 1/L5/3741:3742 | Single stack bend | geometric IL_8C3A_146 NA | |
| IL_9B0S_122 | 1/L5/3708:3714, 1/L5/3739:3742 | No text annotation | ||
| IL_9B0S_123 | 1/L5/3710:3714, 1/L5/3739:3741 | Isolated non-canonical cWW pair | geometric IL_8P9A_444 IL_01003.1 | |
| IL_9B0S_124 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation | homologous IL_8CRE_093 NA | |
| IL_9B0S_125 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation | geometric IL_8P9A_317 IL_24886.1 | |
| IL_9B0S_126 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | homologous IL_8CRE_095 NA | |
| IL_9B0S_127 | 1/L5/3895:3898, 1/L5/4563:4565 | No text annotation | homologous IL_8CRE_096 NA | |
| IL_9B0S_128 | 1/L5/3900:3902, 1/L5/4558:4561 | No text annotation | homologous IL_8CRE_097 NA | |
| IL_9B0S_129 | 1/L5/3913:3915, 1/L5/4388:4389 | Single bulged U | homologous IL_8P9A_321 IL_97561.1 | |
| IL_9B0S_130 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform | homologous IL_8P9A_322 IL_34520.1 | |
| IL_9B0S_131 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | homologous IL_8CRE_100 NA | |
| IL_9B0S_133 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | homologous IL_8CRE_106 NA | |
| IL_9B0S_134 | 1/L5/4191:4192, 1/L5/4202:4204 | Single bulged A | homologous IL_8P9A_325 IL_14190.1 | |
| IL_9B0S_135 | 1/L5/4243:4245, 1/L5/4263:4267 | No text annotation | homologous IL_8P9A_326 IL_14250.1 | |
| IL_9B0S_136 | 1/L5/4291:4293, 1/L5/4317:4318 | Single bulged A | geometric IL_8P9A_242 IL_14190.1 | |
| IL_9B0S_137 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.1 | |
| IL_9B0S_138 | 1/L5/4347:4350, 1/L5/4364:4365 | Single stack bend | geometric IL_8P9A_328 IL_15011.1 | |
| IL_9B0S_139 | 1/L5/4400:4401, 1/L5/4442:4444 | Major groove platform | homologous IL_8P9A_329 IL_48076.7 | |
| IL_9B0S_140 | 1/L5/4401:4403, 1/L5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.1 | |
| IL_9B0S_141 | 1/L5/4403:4405, 1/L5/4439:4440 | No text annotation | homologous IL_8CRE_112 NA | |
| IL_9B0S_142 | 1/L5/4405:4407, 1/L5/4435:4439 | No text annotation | homologous IL_8CRE_113 NA | |
| IL_9B0S_143 | 1/L5/4412:4416, 1/L5/4426:4430 | Double sheared with non-canonical cWW | homologous IL_8P9A_333 IL_87767.1 | |
| IL_9B0S_144 | 1/L5/4453:4454, 1/L5/4526:4528 | No text annotation | homologous IL_8P9A_334 IL_46637.1 | |
| IL_9B0S_145 | 1/L5/4456:4458, 1/L5/4520:4524 | Isolated non-canonical cWW with bulges | homologous IL_8CRE_116 NA | |
| IL_9B0S_146 | 1/L5/4458:4459, 1/L5/4517:4520 | No text annotation | homologous IL_8CRE_117 NA | |
| IL_9B0S_147 | 1/L5/4466:4468, 1/L5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_8P9A_337 IL_01003.1 | |
| IL_9B0S_148 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | ||
| IL_9B0S_149 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | ||
| IL_9B0S_150 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8P9A_340 IL_01003.1 | |
| IL_9B0S_151 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A | homologous IL_8P9A_341 IL_14190.1 | |
| IL_9B0S_152 | 1/L5/4580:4585, 1/L5/4717:4723 | No text annotation | ||
| IL_9B0S_153 | 1/L5/4590:4592, 1/L5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.1 | |
| IL_9B0S_154 | 1/L5/4596:4603, 1/L5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8CRE_125 NA | |
| IL_9B0S_155 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | ||
| IL_9B0S_156 | 1/L5/4632:4637, 1/L5/4662:4666 | No text annotation | homologous IL_8P9A_346 IL_98200.1 | |
| IL_9B0S_157 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.1 | |
| IL_9B0S_158 | 1/L5/4641:4642, 1/L5/4655:4658 | No text annotation | homologous IL_8P9A_347 NA | |
| IL_9B0S_159 | 1/L5/4681:4685, 1/L5/4705:4709 | UAA/GAN | homologous IL_8P9A_348 IL_08938.1 | |
| IL_9B0S_162 | 1/L5/4749:4751, 1/L5/4948:4951 | No text annotation | ||
| IL_9B0S_163 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | ||
| IL_9B0S_166 | 1/L5/4885:4889, 1/L5/4930:4934 | Triple non-canonical cWW pairs | geometric IL_8S95_002 NA | |
| IL_9B0S_167 | 1/L5/4890:4897, 1/L5/4924:4929 | No text annotation | ||
| IL_9B0S_170 | 1/L5/4992:4994, 1/L5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_01003.1 | |
| IL_9B0S_171 | 1/L5/4996:4997, 1/L5/5053:5055 | No text annotation | ||
| IL_9B0S_172 | 1/L5/5000:5002, 1/L5/5045:5050 | No text annotation | homologous IL_8P9A_359 IL_00086.1 | |
| IL_9B0S_173 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | ||
| IL_9B0S_174 | 1/L5/5012:5014, 1/L5/5035:5036 | No text annotation | homologous IL_8CRE_140 NA | |
| IL_9B0S_175 | 1/L5/5014:5017, 1/L5/5032:5035 | Double sheared | homologous IL_8CRE_141 NA | |
| IL_9B0S_176 | 1/L7/15:16, 1/L7/62:64 | Single bulged A | homologous IL_8P9A_364 IL_14190.1 | |
| IL_9B0S_177 | 1/L7/21:27, 1/L7/52:57 | No text annotation | homologous IL_8P9A_365 IL_41504.1 | |
| IL_9B0S_178 | 1/L7/28:29, 1/L7/48:51 | No text annotation | homologous IL_9DFE_112 IL_73108.1 | |
| IL_9B0S_179 | 1/L7/32:36, 1/L7/41:45 | No text annotation | homologous IL_9DFE_113 IL_58103.12 | |
| IL_9B0S_180 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8OI5_139 IL_62167.1 | |
| IL_9B0S_181 | 1/L7/79:81, 1/L7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.1 | |
| IL_9B0S_182 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | homologous IL_8P9A_370 IL_01003.1 | |
| IL_9B0S_183 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_68118.1 | |
| IL_9B0S_187 | 1/S2/37:40, 1/S2/514:518 | Double sheared; A in syn | geometric IL_8T29_001 IL_58355.1 | |
| IL_9B0S_188 | 1/S2/41:47, 1/S2/479:481 | No text annotation | homologous IL_8CRE_393 IL_88082.2 | |
| IL_9B0S_190 | 1/S2/57:62, 1/S2/86:88 | No text annotation | homologous IL_8P9A_378 IL_61299.5 | |
| IL_9B0S_192 | 1/S2/108:112, 1/S2/349:353 | Triple non-canonical cWW pairs | geometric IL_8VMB_003 NA | |
| IL_9B0S_195 | 1/S2/123:124, 1/S2/339:341 | Minor groove platform | geometric IL_8P9A_401 IL_34520.1 | |
| IL_9B0S_196 | 1/S2/130:144, 1/S2/175:182 | No text annotation | ||
| IL_9B0S_197 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_8CRE_400 IL_24485.1 | |
| IL_9B0S_204 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_8CRE_408 IL_46174.4 | |
| IL_9B0S_205 | 1/S2/366:371, 1/S2/393:394 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_9B0S_207 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_8CRE_411 IL_10892.1 | |
| IL_9B0S_209 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | homologous IL_8P9A_396 IL_97561.1 | |
| IL_9B0S_210 | 1/S2/491:495, 1/S2/508:509 | C-loop | homologous IL_8CRE_414 IL_26900.1 | |
| IL_9B0S_211 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | homologous IL_8P9A_398 IL_28408.1 | |
| IL_9B0S_215 | 1/S2/566:569, 1/S2/581:584 | Tandem non-canonical cWW pairs | geometric IL_8HNT_001 IL_71194.1 | |
| IL_9B0S_216 | 1/S2/599:606, 1/S2/636:637 | SSU/LSU pseudoknot | homologous IL_8CRE_421 IL_11411.1 | |
| IL_9B0S_219 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_9B0S_220 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | homologous IL_8P9A_405 IL_20847.1 | |
| IL_9B0S_221 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_8CRE_425 IL_01003.1 | |
| IL_9B0S_222 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS | homologous IL_8CRE_426 IL_05821.1 | |
| IL_9B0S_225 | 1/S2/807:815, 1/S2/849:856 | No text annotation | homologous IL_8CRE_430 IL_59049.2 | |
| IL_9B0S_229 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_6N5P_003 IL_74641.1 | |
| IL_9B0S_231 | 1/S2/928:931, 1/S2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8CRE_433 IL_15225.1 | |
| IL_9B0S_232 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_8CRE_434 IL_15225.1 | |
| IL_9B0S_233 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_8CRE_435 IL_15225.1 | |
| IL_9B0S_234 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | geometric IL_6UFM_001 NA | |
| IL_9B0S_235 | 1/S2/1042:1047, 1/S2/1071:1073 | No text annotation | homologous IL_8CRE_437 IL_31359.1 | |
| IL_9B0S_236 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS | homologous IL_8CRE_438 IL_05821.1 | |
| IL_9B0S_237 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_8P9A_425 IL_82706.2 | |
| IL_9B0S_238 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_8CRE_440 IL_15225.1 | |
| IL_9B0S_241 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8CRE_442 IL_84044.1 | |
| IL_9B0S_242 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A | geometric IL_8P9A_429 IL_14190.1 | |
| IL_9B0S_243 | 1/S2/1203:1208, 1/S2/1691:1696 | No text annotation | ||
| IL_9B0S_244 | 1/S2/1204:1208, 1/S2/1691:1694 | No text annotation | ||
| IL_9B0S_245 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_8CRE_445 IL_63596.12 | |
| IL_9B0S_246 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_8CRE_446 IL_01003.1 | |
| IL_9B0S_247 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | homologous IL_8CRE_447 IL_34520.1 | |
| IL_9B0S_253 | 1/S2/1325:1327, 1/S2/1502:1503 | No text annotation | homologous IL_8CRE_451 IL_97561.1 | |
| IL_9B0S_254 | 1/S2/1329:1333, 1/S2/1498:1500 | No text annotation | geometric IL_8C3A_456 NA | |
| IL_9B0S_255 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_9B0S_256 | 1/S2/1333:1335, 1/S2/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_93811.1 | |
| IL_9B0S_258 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10892.1 | |
| IL_9B0S_259 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_8P9A_443 IL_34520.1 | |
| IL_9B0S_265 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_9B0S_266 | 1/S2/1550:1558, 1/S2/1577:1582 | No text annotation | ||
| IL_9B0S_270 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_8CRE_466 IL_18228.1 | |
| IL_9B0S_271 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_8CRE_467 IL_25873.1 | |
| IL_9B0S_272 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_8CRE_468 IL_01003.1 | |
| IL_9B0S_273 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | geometric IL_8BH9_001 NA | |
| IL_9B0S_274 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_8CRE_470 IL_01003.1 | |
| IL_9B0S_275 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | homologous IL_8P9A_457 IL_58355.1 | |
| IL_9B0S_276 | 1/S2/1720:1722, 1/S2/1811:1813 | Single bulged U | homologous IL_8P9A_458 IL_97561.1 | |
| IL_9B0S_277 | 1/S2/1722:1724, 1/S2/1810:1811 | Intercalated cWW | geometric IL_4WF9_047 IL_61702.1 | |
| IL_9B0S_279 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_8CRE_474 IL_58355.1 | |
| IL_9B0S_280 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_003 IL_01003.1 | |
| IL_9B0S_284 | 1/l5/6:7, 1/l8/149:151 | Single bulged C | homologous IL_8P9A_231 IL_05642.1 | |
| IL_9B0S_285 | 1/l5/12:14, 1/l8/143:144 | No text annotation | homologous IL_8CRE_003 NA | |
| IL_9B0S_286 | 1/l5/16:18, 1/l8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Z7F_006 NA | |
| IL_9B0S_287 | 1/l5/26:27, 1/l5/55:57 | Single stack bend | homologous IL_8CRE_004 NA | |
| IL_9B0S_288 | 1/l5/30:37, 1/l5/44:52 | tSH-tHW-tHH-tHS | homologous IL_8CRE_005 NA | |
| IL_9B0S_289 | 1/l5/81:88, 1/l5/96:102 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_235 IL_53348.1 | |
| IL_9B0S_290 | 1/l5/118:122, 1/l5/147:153 | No text annotation | ||
| IL_9B0S_291 | 1/l5/125:126, 1/l5/142:144 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9B0S_292 | 1/l5/169:173, 1/l5/263:266 | No text annotation | ||
| IL_9B0S_294 | 1/l5/195:196, 1/l5/244:246 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_9B0S_295 | 1/l5/199:201, 1/l5/214:215 | No text annotation | homologous IL_8CRE_013 NA | |
| IL_9B0S_296 | 1/l5/339:342, 1/l8/32:33 | Minor groove platform | geometric IL_9DFE_073 IL_24264.1 | |
| IL_9B0S_297 | 1/l5/348:350, 1/l8/25:26 | Single bulged A | homologous IL_8CRE_014 NA | |
| IL_9B0S_298 | 1/l5/387:390, 1/l5/401:414 | No text annotation | geometric IL_8P9A_243 IL_44923.1 | |
| IL_9B0S_299 | 1/l5/415:421, 1/l8/13:19 | No text annotation | homologous IL_8P9A_244 IL_22311.1 | |
| IL_9B0S_300 | 1/l5/443:446, 1/l5/1300:1304 | No text annotation | ||
| IL_9B0S_301 | 1/l5/448:450, 1/l5/1297:1298 | No text annotation | ||
| IL_9B0S_302 | 1/l5/459:460, 1/l5/695:697 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_9B0S_303 | 1/l5/462:464, 1/l5/691:693 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_01003.1 | |
| IL_9B0S_304 | 1/l5/466:472, 1/l5/682:689 | No text annotation | ||
| IL_9B0S_305 | 1/l5/482:485, 1/l5/671:672 | Multiple bulged bases | geometric IL_1R3E_002 IL_44609.1 | |
| IL_9B0S_306 | 1/l5/487:488, 1/l5/665:669 | No text annotation | ||
| IL_9B0S_310 | 1/l5/508:510, 1/l5/649:650 | Single bulged A | geometric IL_6WPI_001 IL_14190.1 | |
| IL_9B0S_312 | 1/l5/709:710, 1/l5/1286:1288 | Single bulged G | geometric IL_6CZR_148 NA | |
| IL_9B0S_313 | 1/l5/723:724, 1/l5/942:945 | Multiple bulged bases | geometric IL_7Q80_003 IL_44609.1 | |
| IL_9B0S_314 | 1/l5/727:731, 1/l5/938:939 | No text annotation | ||
| IL_9B0S_315 | 1/l5/732:735, 1/l5/928:937 | No text annotation | ||
| IL_9B0S_316 | 1/l5/737:739, 1/l5/925:926 | No text annotation | ||
| IL_9B0S_317 | 1/l5/739:742, 1/l5/922:925 | No text annotation | ||
| IL_9B0S_318 | 1/l5/745:752, 1/l5/911:919 | No text annotation | geometric IL_8P9A_248 IL_25001.1 | |
| IL_9B0S_320 | 1/l5/1073:1074, 1/l5/1237:1239 | Single bulged A | geometric IL_4R4V_003 IL_14190.1 | |
| IL_9B0S_321 | 1/l5/1077:1079, 1/l5/1221:1234 | No text annotation | ||
| IL_9B0S_322 | 1/l5/1079:1080, 1/l5/1219:1221 | Single stack bend | geometric IL_8P9A_298 IL_15011.1 | |
| IL_9B0S_323 | 1/l5/1082:1084, 1/l5/1213:1217 | Isolated cWH basepair | geometric IL_4KTG_005 NA | |
| IL_9B0S_324 | 1/l5/1086:1087, 1/l5/1209:1211 | Single bulged C | geometric IL_3W3S_001 NA | |
| IL_9B0S_325 | 1/l5/1093:1094, 1/l5/1201:1203 | No text annotation | ||
| IL_9B0S_329 | 1/l5/1244:1245, 1/l5/1265:1267 | Single bulged G | geometric IL_8P9A_430 IL_28408.1 | |
| IL_9B0S_330 | 1/l5/1357:1360, 1/l5/1379:1382 | No text annotation | ||
| IL_9B0S_331 | 1/l5/1357:1361, 1/l5/1376:1382 | No text annotation | ||
| IL_9B0S_332 | 1/l5/1360:1361, 1/l5/1376:1379 | Single bulged A | geometric IL_4V9F_090 IL_73464.1 | |
| IL_9B0S_333 | 1/l5/1425:1429, 1/l5/1455:1460 | No text annotation | geometric IL_3BBM_001 IL_47352.1 | |
| IL_9B0S_334 | 1/l5/1431:1434, 1/l5/1450:1453 | Double sheared | geometric IL_4WF9_087 IL_58355.1 | |
| IL_9B0S_335 | 1/l5/1467:1468, 1/l5/1496:1498 | Single bulged A | homologous IL_8P9A_252 IL_14190.1 | |
| IL_9B0S_336 | 1/l5/1474:1476, 1/l5/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_9B0S_337 | 1/l5/1479:1480, 1/l5/1484:1486 | No text annotation | ||
| IL_9B0S_338 | 1/l5/1520:1522, 1/l5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.1 | |
| IL_9B0S_339 | 1/l5/1522:1526, 1/l5/1648:1655 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_9B0S_340 | 1/l5/1545:1546, 1/l5/1612:1614 | Single bulged A | homologous IL_8CRE_031 NA | |
| IL_9B0S_341 | 1/l5/1550:1551, 1/l5/1576:1578 | No text annotation | homologous IL_8CRE_032 NA | |
| IL_9B0S_342 | 1/l5/1551:1555, 1/l5/1572:1576 | Triple sheared | homologous IL_8CRE_033 NA | |
| IL_9B0S_343 | 1/l5/1586:1589, 1/l5/1605:1607 | No text annotation | homologous IL_8CRE_034 NA | |
| IL_9B0S_344 | 1/l5/1590:1592, 1/l5/1603:1604 | Single bulged U | homologous IL_8P9A_260 IL_97561.1 | |
| IL_9B0S_345 | 1/l5/1624:1626, 1/l5/1636:1640 | No text annotation | homologous IL_8CRE_036 NA | |
| IL_9B0S_346 | 1/l5/1671:1673, 1/l5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_71625.1 | |
| IL_9B0S_347 | 1/l5/1686:1688, 1/l5/1848:1851 | No text annotation | ||
| IL_9B0S_348 | 1/l5/1694:1721, 1/l5/1841:1842 | No text annotation | ||
| IL_9B0S_349 | 1/l5/1723:1725, 1/l5/1838:1839 | No text annotation | homologous IL_8CRE_040 NA | |
| IL_9B0S_350 | 1/l5/1732:1737, 1/l5/1792:1797 | No text annotation | ||
| IL_9B0S_351 | 1/l5/1737:1738, 1/l5/1790:1792 | Minor groove platform | homologous IL_8CRE_042 NA | |
| IL_9B0S_352 | 1/l5/1739:1744, 1/l5/1786:1789 | C-loop with bulged stacked A's | homologous IL_8CRE_043 NA | |
| IL_9B0S_353 | 1/l5/1746:1749, 1/l5/1781:1784 | Tandem non-canonical cWW pairs | homologous IL_8CRE_044 NA | |
| IL_9B0S_354 | 1/l5/1749:1751, 1/l5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_01003.1 | |
| IL_9B0S_355 | 1/l5/1753:1756, 1/l5/1775:1777 | No text annotation | geometric IL_4V9F_053 IL_86407.1 | |
| IL_9B0S_357 | 1/l5/1814:1816, 1/l5/1823:1824 | Single bulged A | homologous IL_8P9A_273 IL_14190.1 | |
| IL_9B0S_358 | 1/l5/1858:1860, 1/l5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.1 | |
| IL_9B0S_360 | 1/l5/1905:1909, 1/l5/2067:2071 | UAA/GAN | homologous IL_8P9A_276 IL_08938.1 | |
| IL_9B0S_361 | 1/l5/1911:1918, 1/l5/2064:2065 | SSU/LSU pseudoknot | homologous IL_8CRE_052 NA | |
| IL_9B0S_362 | 1/l5/1918:1920, 1/l5/2063:2064 | Single bulged G | geometric IL_8TSV_002 NA | |
| IL_9B0S_363 | 1/l5/1920:1922, 1/l5/2062:2063 | No text annotation | ||
| IL_9B0S_364 | 1/l5/1926:1933, 1/l5/2053:2058 | No text annotation | homologous IL_8CRE_054 NA | |
| IL_9B0S_365 | 1/l5/1933:1944, 1/l5/2038:2053 | No text annotation | homologous IL_8P9A_280 IL_34501.1 | |
| IL_9B0S_366 | 1/l5/1946:1948, 1/l5/2035:2036 | Single bulged U | homologous IL_8P9A_281 IL_97561.1 | |
| IL_9B0S_367 | 1/l5/1957:1965, 1/l5/2022:2026 | Kink-turn | homologous IL_8CRE_057 NA | |
| IL_9B0S_368 | 1/l5/1971:1973, 1/l5/1994:1995 | Single stack bend | geometric IL_8P9A_263 IL_15011.1 | |
| IL_9B0S_370 | 1/l5/2001:2005, 1/l5/2014:2016 | No text annotation | homologous IL_8P9A_284 IL_36931.1 | |
| IL_9B0S_371 | 1/l5/2083:2085, 1/l5/2272:2273 | Single bulged C | geometric IL_4C7O_003 NA | |
| IL_9B0S_372 | 1/l5/2290:2292, 1/l5/2342:2345 | No text annotation | homologous IL_8CRE_061 NA | |
| IL_9B0S_373 | 1/l5/2299:2301, 1/l5/2334:2335 | Single bulged A | homologous IL_8CRE_062 NA | |
| IL_9B0S_374 | 1/l5/2302:2309, 1/l5/2329:2333 | Kink-turn | homologous IL_8P9A_287 IL_90775.1 | |
| IL_9B0S_375 | 1/l5/2312:2314, 1/l5/2325:2326 | Single bulged A | homologous IL_8P9A_288 IL_14190.1 | |
| IL_9B0S_376 | 1/l5/2358:2364, 1/l5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8CRE_065 NA | |
| IL_9B0S_377 | 1/l5/2415:2419, 1/l5/2427:2429 | C-loop | homologous IL_8CRE_066 NA | |
| IL_9B0S_378 | 1/l5/2446:2450, 1/l5/2509:2514 | UAA/GAN | homologous IL_8CRE_067 NA | |
| IL_9B0S_379 | 1/l5/2477:2479, 1/l5/2499:2500 | Minor groove platform related | geometric IL_7TZS_003 IL_34520.1 | |
| IL_9B0S_381 | 1/l5/2542:2547, 1/l5/2772:2774 | No text annotation | ||
| IL_9B0S_382 | 1/l5/2549:2550, 1/l5/2768:2770 | No text annotation | homologous IL_8CRE_070 NA | |
| IL_9B0S_383 | 1/l5/2589:2593, 1/l5/2752:2756 | Triple sheared | homologous IL_8P9A_295 IL_15190.1 | |
| IL_9B0S_384 | 1/l5/2613:2614, 1/l5/2724:2726 | Single bulged C | homologous IL_8P9A_297 IL_05642.1 | |
| IL_9B0S_385 | 1/l5/2614:2615, 1/l5/2722:2724 | Single stack bend | homologous IL_8CRE_075 NA | |
| IL_9B0S_386 | 1/l5/2646:2648, 1/l5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_87316.1 | |
| IL_9B0S_387 | 1/l5/2651:2653, 1/l5/2681:2682 | Single bulged G | geometric IL_7D7W_002 IL_28408.1 | |
| IL_9B0S_388 | 1/l5/2656:2662, 1/l5/2672:2678 | No text annotation | homologous IL_8P9A_301 IL_93476.1 | |
| IL_9B0S_389 | 1/l5/2832:2838, 1/l5/3850:3853 | No text annotation | homologous IL_8CRE_079 NA | |
| IL_9B0S_390 | 1/l5/2844:2846, 1/l5/3842:3844 | No text annotation | homologous IL_8P9A_303 IL_10432.1 | |
| IL_9B0S_391 | 1/l5/2847:2850, 1/l5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_8P9A_304 IL_74641.1 | |
| IL_9B0S_392 | 1/l5/2847:2855, 1/l5/3837:3841 | No text annotation | geometric IL_8P9A_305 IL_80252.1 | |
| IL_9B0S_393 | 1/l5/2850:2855, 1/l5/3837:3840 | No text annotation | homologous IL_8P9A_306 IL_28217.1 | |
| IL_9B0S_394 | 1/l5/2867:2872, 1/l5/2877:2883 | No text annotation | homologous IL_8CRE_084 NA | |
| IL_9B0S_395 | 1/l5/2889:2891, 1/l5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8P9A_308 IL_01003.1 | |
| IL_9B0S_396 | 1/l5/2896:2897, 1/l5/3602:3605 | No text annotation | homologous IL_8CRE_086 NA | |
| IL_9B0S_397 | 1/l5/2901:2905, 1/l5/3589:3598 | No text annotation | ||
| IL_9B0S_399 | 1/l5/3632:3633, 1/l5/3827:3829 | Single bulged A | homologous IL_8P9A_310 IL_14190.1 | |
| IL_9B0S_400 | 1/l5/3660:3665, 1/l5/3677:3684 | No text annotation | homologous IL_8CRE_088 NA | |
| IL_9B0S_401 | 1/l5/3700:3703, 1/l5/3749:3750 | Minor groove platform, major groove intercalation | homologous IL_8CRE_089 NA | |
| IL_9B0S_402 | 1/l5/3704:3705, 1/l5/3745:3748 | No text annotation | homologous IL_8CRE_090 NA | |
| IL_9B0S_403 | 1/l5/3708:3710, 1/l5/3741:3742 | Single stack bend | homologous IL_8CRE_091 NA | |
| IL_9B0S_404 | 1/l5/3710:3714, 1/l5/3739:3741 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_9B0S_405 | 1/l5/3715:3721, 1/l5/3732:3738 | No text annotation | homologous IL_8P9A_316 IL_65359.1 | |
| IL_9B0S_406 | 1/l5/3780:3781, 1/l5/3811:3814 | No text annotation | geometric IL_8P9A_317 IL_24886.1 | |
| IL_9B0S_407 | 1/l5/3781:3792, 1/l5/3808:3811 | No text annotation | homologous IL_8CRE_095 NA | |
| IL_9B0S_408 | 1/l5/3895:3898, 1/l5/4563:4565 | No text annotation | homologous IL_8CRE_096 NA | |
| IL_9B0S_409 | 1/l5/3900:3902, 1/l5/4558:4561 | No text annotation | homologous IL_8CRE_097 NA | |
| IL_9B0S_410 | 1/l5/3913:3915, 1/l5/4388:4389 | No text annotation | homologous IL_8CRE_098 NA | |
| IL_9B0S_411 | 1/l5/3916:3917, 1/l5/4384:4387 | Minor groove platform | homologous IL_8P9A_322 IL_34520.1 | |
| IL_9B0S_412 | 1/l5/3927:3929, 1/l5/4181:4184 | No text annotation | homologous IL_8CRE_100 NA | |
| IL_9B0S_413 | 1/l5/4082:4088, 1/l5/4161:4164 | No text annotation | homologous IL_8CRE_106 NA | |
| IL_9B0S_414 | 1/l5/4191:4192, 1/l5/4202:4204 | No text annotation | homologous IL_8CRE_107 NA | |
| IL_9B0S_415 | 1/l5/4243:4245, 1/l5/4263:4267 | No text annotation | homologous IL_8P9A_326 IL_14250.1 | |
| IL_9B0S_416 | 1/l5/4291:4293, 1/l5/4317:4318 | Single bulged A | geometric IL_7MKY_001 IL_14190.1 | |
| IL_9B0S_417 | 1/l5/4295:4298, 1/l5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.1 | |
| IL_9B0S_418 | 1/l5/4347:4350, 1/l5/4364:4365 | Single stack bend | geometric IL_8P9A_328 IL_15011.1 | |
| IL_9B0S_419 | 1/l5/4400:4401, 1/l5/4442:4444 | Major groove platform | homologous IL_8P9A_329 IL_48076.7 | |
| IL_9B0S_420 | 1/l5/4401:4403, 1/l5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.1 | |
| IL_9B0S_421 | 1/l5/4403:4405, 1/l5/4439:4440 | No text annotation | homologous IL_8CRE_112 NA | |
| IL_9B0S_422 | 1/l5/4405:4407, 1/l5/4435:4439 | No text annotation | homologous IL_8CRE_113 NA | |
| IL_9B0S_423 | 1/l5/4412:4416, 1/l5/4426:4430 | Double sheared with non-canonical cWW | homologous IL_8P9A_333 IL_87767.1 | |
| IL_9B0S_424 | 1/l5/4453:4454, 1/l5/4526:4528 | No text annotation | homologous IL_8P9A_334 IL_46637.1 | |
| IL_9B0S_425 | 1/l5/4456:4458, 1/l5/4520:4524 | Isolated non-canonical cWW with bulges | homologous IL_8CRE_116 NA | |
| IL_9B0S_426 | 1/l5/4458:4459, 1/l5/4517:4520 | No text annotation | homologous IL_8P9A_336 IL_44609.1 | |
| IL_9B0S_427 | 1/l5/4466:4468, 1/l5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_8P9A_337 IL_01003.1 | |
| IL_9B0S_428 | 1/l5/4466:4470, 1/l5/4485:4491 | No text annotation | ||
| IL_9B0S_429 | 1/l5/4468:4470, 1/l5/4485:4489 | No text annotation | ||
| IL_9B0S_430 | 1/l5/4495:4497, 1/l5/4503:4505 | Isolated non-canonical cWW pair | homologous IL_8CRE_121 NA | |
| IL_9B0S_431 | 1/l5/4537:4538, 1/l5/4547:4549 | Single bulged A | homologous IL_8P9A_341 IL_14190.1 | |
| IL_9B0S_432 | 1/l5/4580:4582, 1/l5/4721:4723 | Isolated cWH basepair | geometric IL_4E5C_001 NA | |
| IL_9B0S_433 | 1/l5/4582:4585, 1/l5/4717:4721 | Double sheared | geometric IL_6YML_002 IL_58355.1 | |
| IL_9B0S_434 | 1/l5/4590:4592, 1/l5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_71625.1 | |
| IL_9B0S_435 | 1/l5/4596:4603, 1/l5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8P9A_344 IL_62167.1 | |
| IL_9B0S_436 | 1/l5/4624:4629, 1/l5/4669:4673 | No text annotation | ||
| IL_9B0S_437 | 1/l5/4632:4637, 1/l5/4662:4666 | No text annotation | homologous IL_8CRE_127 NA | |
| IL_9B0S_438 | 1/l5/4638:4640, 1/l5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_012 IL_10892.1 | |
| IL_9B0S_439 | 1/l5/4641:4642, 1/l5/4655:4658 | No text annotation | homologous IL_8P9A_347 NA | |
| IL_9B0S_440 | 1/l5/4681:4685, 1/l5/4705:4709 | UAA/GAN | homologous IL_8P9A_348 IL_08938.1 | |
| IL_9B0S_442 | 1/l5/4743:4746, 1/l5/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_8C3A_444 NA | |
| IL_9B0S_443 | 1/l5/4749:4751, 1/l5/4948:4951 | No text annotation | ||
| IL_9B0S_444 | 1/l5/4756:4765, 1/l5/4869:4877 | No text annotation | ||
| IL_9B0S_445 | 1/l5/4769:4771, 1/l5/4863:4865 | Isolated non-canonical cWW pair | geometric IL_3GM7_006 IL_01003.1 | |
| IL_9B0S_446 | 1/l5/4885:4889, 1/l5/4930:4934 | Triple non-canonical cWW pairs | geometric IL_8S95_002 NA | |
| IL_9B0S_447 | 1/l5/4890:4897, 1/l5/4924:4929 | No text annotation | ||
| IL_9B0S_450 | 1/l5/4972:4975, 1/l5/4983:4986 | Tandem non-canonical cWW pairs | homologous IL_8CRE_135 NA | |
| IL_9B0S_451 | 1/l5/4992:4994, 1/l5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3DIL_006 IL_01003.1 | |
| IL_9B0S_452 | 1/l5/4996:4997, 1/l5/5053:5055 | No text annotation | ||
| IL_9B0S_453 | 1/l5/5000:5002, 1/l5/5045:5050 | No text annotation | homologous IL_8P9A_359 IL_00086.1 | |
| IL_9B0S_454 | 1/l5/5003:5009, 1/l5/5039:5044 | No text annotation | ||
| IL_9B0S_455 | 1/l5/5012:5014, 1/l5/5035:5036 | No text annotation | homologous IL_8CRE_140 NA | |
| IL_9B0S_456 | 1/l5/5014:5017, 1/l5/5032:5035 | Double sheared | homologous IL_8CRE_141 NA | |
| IL_9B0S_457 | 1/l7/15:16, 1/l7/62:64 | Single bulged A | homologous IL_8OI5_134 IL_14190.1 | |
| IL_9B0S_458 | 1/l7/21:27, 1/l7/52:57 | No text annotation | homologous IL_8OI5_135 IL_41504.1 | |
| IL_9B0S_459 | 1/l7/28:29, 1/l7/48:51 | No text annotation | homologous IL_9DFE_112 IL_73108.1 | |
| IL_9B0S_460 | 1/l7/32:36, 1/l7/41:45 | No text annotation | homologous IL_9DFE_113 IL_58103.12 | |
| IL_9B0S_461 | 1/l7/71:78, 1/l7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8OI5_139 IL_62167.1 | |
| IL_9B0S_462 | 1/l7/79:81, 1/l7/95:97 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.1 | |
| IL_9B0S_463 | 1/l7/82:85, 1/l7/92:94 | Isolated non-canonical cWW pair | homologous IL_8OI5_140 IL_01003.1 | |
| IL_9B0S_464 | 1/l8/64:66, 1/l8/92:95 | Isolated non-canonical cWW with bulges | homologous IL_8P9A_371 IL_68118.1 | |
| IL_9B0S_465 | 1/s2/23:25, 1/s2/649:651 | Isolated non-canonical cWW pair | geometric IL_8C3A_427 NA | |
| IL_9B0S_466 | 1/s2/34:36, 1/s2/519:521 | Isolated non-canonical cWW pair | homologous IL_8CRE_391 IL_01003.1 | |
| IL_9B0S_467 | 1/s2/37:40, 1/s2/514:518 | Double sheared | geometric IL_4WF9_016 IL_58355.1 | |
| IL_9B0S_468 | 1/s2/41:47, 1/s2/479:481 | No text annotation | geometric IL_8P9A_376 IL_88082.2 | |
| IL_9B0S_469 | 1/s2/49:51, 1/s2/476:477 | Minor groove platform | homologous IL_8P9A_377 IL_34520.1 | |
| IL_9B0S_470 | 1/s2/57:62, 1/s2/86:88 | No text annotation | homologous IL_8P9A_378 IL_61299.5 | |
| IL_9B0S_471 | 1/s2/63:68, 1/s2/81:85 | No text annotation | homologous IL_8P9A_379 IL_21667.2 | |
| IL_9B0S_472 | 1/s2/108:110, 1/s2/351:353 | Isolated non-canonical cWW pair | geometric IL_8P9A_262 IL_71625.1 | |
| IL_9B0S_473 | 1/s2/110:112, 1/s2/349:351 | Isolated non-canonical cWW pair | geometric IL_7MLW_001 NA | |
| IL_9B0S_474 | 1/s2/112:115, 1/s2/348:349 | No text annotation | homologous IL_8CRE_398 IL_71421.1 | |
| IL_9B0S_475 | 1/s2/116:121, 1/s2/343:347 | No text annotation | homologous IL_8CRE_399 IL_31545.1 | |
| IL_9B0S_476 | 1/s2/123:124, 1/s2/339:341 | Minor groove platform | geometric IL_8P9A_401 IL_34520.1 | |
| IL_9B0S_477 | 1/s2/130:144, 1/s2/175:182 | No text annotation | ||
| IL_9B0S_478 | 1/s2/145:151, 1/s2/167:174 | No text annotation | homologous IL_8CRE_400 IL_24485.1 | |
| IL_9B0S_479 | 1/s2/152:154, 1/s2/164:166 | No text annotation | homologous IL_8P9A_384 IL_23751.1 | |
| IL_9B0S_480 | 1/s2/188:192, 1/s2/207:211 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.1 | |
| IL_9B0S_481 | 1/s2/216:219, 1/s2/302:309 | No text annotation | ||
| IL_9B0S_482 | 1/s2/223:288, 1/s2/295:298 | No text annotation | ||
| IL_9B0S_483 | 1/s2/312:314, 1/s2/336:337 | Single bulged A | homologous IL_8P9A_388 IL_14190.1 | |
| IL_9B0S_484 | 1/s2/317:319, 1/s2/332:333 | No text annotation | ||
| IL_9B0S_485 | 1/s2/359:364, 1/s2/396:403 | Kink-turn with non-sequential stacking | homologous IL_8CRE_408 IL_46174.4 | |
| IL_9B0S_486 | 1/s2/366:371, 1/s2/393:394 | No text annotation | homologous IL_8P9A_392 IL_01372.1 | |
| IL_9B0S_487 | 1/s2/411:413, 1/s2/424:429 | No text annotation | homologous IL_8P9A_393 IL_93336.1 | |
| IL_9B0S_488 | 1/s2/437:439, 1/s2/454:456 | Isolated cWH basepair | homologous IL_8CRE_411 IL_10892.1 | |
| IL_9B0S_489 | 1/s2/459:461, 1/s2/468:470 | No text annotation | homologous IL_8CRE_412 IL_42997.4 | |
| IL_9B0S_490 | 1/s2/487:489, 1/s2/511:512 | Single bulged U | homologous IL_8P9A_396 IL_97561.1 | |
| IL_9B0S_491 | 1/s2/491:495, 1/s2/508:509 | C-loop | homologous IL_8CRE_414 IL_26900.1 | |
| IL_9B0S_492 | 1/s2/495:496, 1/s2/506:508 | No text annotation | homologous IL_8CRE_415 IL_28408.1 | |
| IL_9B0S_497 | 1/s2/599:606, 1/s2/636:637 | SSU/LSU pseudoknot | homologous IL_8CRE_421 IL_11411.1 | |
| IL_9B0S_498 | 1/s2/606:608, 1/s2/635:636 | No text annotation | homologous IL_8CRE_422 IL_97561.1 | |
| IL_9B0S_499 | 1/s2/611:617, 1/s2/624:632 | No text annotation | homologous IL_8P9A_404 IL_52042.1 | |
| IL_9B0S_500 | 1/s2/663:665, 1/s2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 NA | |
| IL_9B0S_501 | 1/s2/665:671, 1/s2/1161:1162 | No text annotation | homologous IL_8CRE_424 IL_20847.1 | |
| IL_9B0S_502 | 1/s2/673:675, 1/s2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_8CRE_425 IL_01003.1 | |
| IL_9B0S_503 | 1/s2/676:680, 1/s2/1025:1029 | tSH-tHW-tHS | homologous IL_8CRE_426 IL_05821.1 | |
| IL_9B0S_504 | 1/s2/802:803, 1/s2/860:863 | No text annotation | homologous IL_8P9A_412 IL_73108.1 | |
| IL_9B0S_505 | 1/s2/805:807, 1/s2/856:858 | Isolated non-canonical cWW pair | homologous IL_8CRE_429 IL_71625.1 | |
| IL_9B0S_506 | 1/s2/807:815, 1/s2/849:856 | No text annotation | homologous IL_8CRE_430 IL_59049.2 | |
| IL_9B0S_507 | 1/s2/874:876, 1/s2/910:912 | Isolated non-canonical cWW pair | geometric IL_5AOX_001 IL_01003.1 | |
| IL_9B0S_508 | 1/s2/877:879, 1/s2/907:909 | Isolated non-canonical cWW pair | geometric IL_8P9A_270 IL_01003.1 | |
| IL_9B0S_509 | 1/s2/922:923, 1/s2/1019:1022 | Major groove platform; stack outside cWW | geometric IL_8P9A_417 IL_74641.1 | |
| IL_9B0S_510 | 1/s2/925:926, 1/s2/1015:1017 | Single bulged U | geometric IL_8P9A_281 IL_97561.1 | |
| IL_9B0S_511 | 1/s2/928:931, 1/s2/1010:1013 | Tandem non-canonical cWW pairs | homologous IL_8CRE_433 IL_15225.1 | |
| IL_9B0S_512 | 1/s2/931:935, 1/s2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_8CRE_434 IL_15225.1 | |
| IL_9B0S_513 | 1/s2/942:945, 1/s2/981:984 | Tandem non-canonical cWW pairs | homologous IL_8P9A_421 IL_15225.1 | |
| IL_9B0S_514 | 1/s2/952:956, 1/s2/967:974 | Kink-turn | geometric IL_6UFM_001 NA | |
| IL_9B0S_515 | 1/s2/1042:1047, 1/s2/1071:1073 | No text annotation | homologous IL_8CRE_437 IL_31359.1 | |
| IL_9B0S_516 | 1/s2/1047:1051, 1/s2/1067:1071 | tSH-tHW-tHS | homologous IL_8CRE_438 IL_05821.1 | |
| IL_9B0S_517 | 1/s2/1091:1093, 1/s2/1152:1158 | No text annotation | homologous IL_8P9A_425 IL_82706.2 | |
| IL_9B0S_518 | 1/s2/1098:1101, 1/s2/1131:1134 | Tandem non-canonical cWW pairs | homologous IL_8CRE_440 IL_15225.1 | |
| IL_9B0S_519 | 1/s2/1101:1103, 1/s2/1129:1131 | Isolated cWH basepair | geometric IL_406D_004 NA | |
| IL_9B0S_520 | 1/s2/1108:1110, 1/s2/1123:1124 | Single stack bend | geometric IL_5VSU_003 IL_15011.1 | |
| IL_9B0S_521 | 1/s2/1168:1175, 1/s2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_8CRE_442 IL_84044.1 | |
| IL_9B0S_522 | 1/s2/1203:1204, 1/s2/1694:1696 | Single bulged A | homologous IL_8CRE_443 IL_14190.1 | |
| IL_9B0S_523 | 1/s2/1206:1208, 1/s2/1691:1692 | No text annotation | homologous IL_8CRE_444 IL_28408.1 | |
| IL_9B0S_524 | 1/s2/1214:1217, 1/s2/1681:1685 | C-loop | homologous IL_8CRE_445 IL_63596.12 | |
| IL_9B0S_525 | 1/s2/1230:1232, 1/s2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_01003.1 | |
| IL_9B0S_526 | 1/s2/1235:1236, 1/s2/1521:1523 | Minor groove platform | homologous IL_8P9A_433 IL_34520.1 | |
| IL_9B0S_527 | 1/s2/1270:1272, 1/s2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_8CRE_448 IL_01003.1 | |
| IL_9B0S_528 | 1/s2/1281:1290, 1/s2/1309:1316 | No text annotation | homologous IL_8P9A_470 IL_28304.1 | |
| IL_9B0S_529 | 1/s2/1291:1293, 1/s2/1306:1308 | No text annotation | homologous IL_8CRE_450 IL_55553.1 | |
| IL_9B0S_530 | 1/s2/1325:1327, 1/s2/1502:1503 | No text annotation | homologous IL_8CRE_451 IL_97561.1 | |
| IL_9B0S_531 | 1/s2/1329:1333, 1/s2/1498:1500 | No text annotation | geometric IL_8C3A_456 NA | |
| IL_9B0S_532 | 1/s2/1329:1335, 1/s2/1492:1500 | No text annotation | geometric IL_8P9A_439 IL_99893.1 | |
| IL_9B0S_533 | 1/s2/1333:1335, 1/s2/1492:1498 | No text annotation | homologous IL_8P9A_440 IL_93811.1 | |
| IL_9B0S_534 | 1/s2/1337:1338, 1/s2/1488:1490 | Single bulged A | homologous IL_8CRE_455 IL_14190.1 | |
| IL_9B0S_535 | 1/s2/1347:1349, 1/s2/1380:1382 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10892.1 | |
| IL_9B0S_536 | 1/s2/1363:1365, 1/s2/1374:1375 | Minor groove platform | homologous IL_8CRE_457 IL_34520.1 | |
| IL_9B0S_537 | 1/s2/1395:1399, 1/s2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 NA | |
| IL_9B0S_538 | 1/s2/1402:1405, 1/s2/1441:1444 | No text annotation | homologous IL_8CRE_481 IL_78800.2 | |
| IL_9B0S_539 | 1/s2/1408:1409, 1/s2/1432:1438 | No text annotation | ||
| IL_9B0S_540 | 1/s2/1412:1413, 1/s2/1427:1429 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_9B0S_541 | 1/s2/1537:1539, 1/s2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_4ZC7_004 IL_01003.1 | |
| IL_9B0S_542 | 1/s2/1541:1550, 1/s2/1582:1592 | No text annotation | ||
| IL_9B0S_543 | 1/s2/1550:1558, 1/s2/1577:1582 | No text annotation | ||
| IL_9B0S_544 | 1/s2/1560:1562, 1/s2/1573:1575 | Isolated non-canonical cWW pair | homologous IL_8CRE_464 IL_71625.1 | |
| IL_9B0S_545 | 1/s2/1604:1610, 1/s2/1629:1635 | No text annotation | ||
| IL_9B0S_546 | 1/s2/1700:1702, 1/s2/1833:1836 | No text annotation | homologous IL_8P9A_452 IL_18228.1 | |
| IL_9B0S_547 | 1/s2/1702:1705, 1/s2/1829:1833 | No text annotation | homologous IL_8CRE_467 IL_25873.1 | |
| IL_9B0S_548 | 1/s2/1706:1708, 1/s2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_8P9A_454 IL_01003.1 | |
| IL_9B0S_549 | 1/s2/1708:1711, 1/s2/1822:1826 | No text annotation | geometric IL_8BH9_001 NA | |
| IL_9B0S_550 | 1/s2/1714:1716, 1/s2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_8P9A_456 IL_01003.1 | |
| IL_9B0S_551 | 1/s2/1717:1720, 1/s2/1813:1816 | Double sheared | homologous IL_8P9A_457 IL_58355.1 | |
| IL_9B0S_552 | 1/s2/1720:1722, 1/s2/1811:1813 | Single bulged U | homologous IL_8P9A_458 IL_97561.1 | |
| IL_9B0S_553 | 1/s2/1723:1726, 1/s2/1808:1810 | No text annotation | geometric IL_7KJT_002 IL_32983.1 | |
| IL_9B0S_554 | 1/s2/1729:1731, 1/s2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_8CRE_473 IL_71625.1 | |
| IL_9B0S_555 | 1/s2/1733:1736, 1/s2/1798:1801 | Double sheared | homologous IL_8CRE_474 IL_58355.1 | |
| IL_9B0S_556 | 1/s2/1739:1741, 1/s2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_001 IL_01003.1 | |
| IL_9B0S_557 | 1/s2/1742:1746, 1/s2/1788:1792 | Triple sheared | homologous IL_8CRE_476 IL_15190.1 | |
| IL_9B0S_558 | 1/s2/1750:1754, 1/s2/1778:1784 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9B0S_001 | Isolated non-canonical cWW pair | ||
| IL_9B0S_011 | No text annotation | ||
| IL_9B0S_012 | No text annotation | ||
| IL_9B0S_020 | No text annotation | ||
| IL_9B0S_021 | Single bulged C | ||
| IL_9B0S_022 | Isolated non-canonical cWW contact | ||
| IL_9B0S_023 | No text annotation | ||
| IL_9B0S_024 | Major groove intercalation | ||
| IL_9B0S_025 | No text annotation | ||
| IL_9B0S_026 | No text annotation | ||
| IL_9B0S_027 | No text annotation | ||
| IL_9B0S_028 | Single stack bend | ||
| IL_9B0S_030 | No text annotation | ||
| IL_9B0S_035 | No text annotation | ||
| IL_9B0S_036 | No text annotation | ||
| IL_9B0S_038 | No text annotation | ||
| IL_9B0S_040 | No text annotation | ||
| IL_9B0S_041 | No text annotation | ||
| IL_9B0S_042 | Single bulged C | ||
| IL_9B0S_043 | No text annotation | ||
| IL_9B0S_044 | Isolated non-canonical cWW pair | ||
| IL_9B0S_045 | Intercalated cWW | ||
| IL_9B0S_046 | No text annotation | ||
| IL_9B0S_047 | Single bulged G | ||
| IL_9B0S_073 | No text annotation | ||
| IL_9B0S_074 | No text annotation | ||
| IL_9B0S_077 | No text annotation | ||
| IL_9B0S_086 | No text annotation | ||
| IL_9B0S_087 | No text annotation | ||
| IL_9B0S_098 | Tandem non-canonical cWW pairs | ||
| IL_9B0S_116 | No text annotation | ||
| IL_9B0S_132 | No text annotation | ||
| IL_9B0S_160 | No text annotation | ||
| IL_9B0S_161 | Tandem non-canonical cWW pairs | ||
| IL_9B0S_164 | Isolated non-canonical cWW pair | ||
| IL_9B0S_165 | Single stack bend | ||
| IL_9B0S_168 | Single stack bend | ||
| IL_9B0S_169 | Single bulged C | ||
| IL_9B0S_184 | No text annotation | ||
| IL_9B0S_185 | Isolated non-canonical cWW pair | ||
| IL_9B0S_186 | Isolated non-canonical cWW pair | ||
| IL_9B0S_189 | Minor groove platform | ||
| IL_9B0S_191 | No text annotation | ||
| IL_9B0S_193 | No text annotation | ||
| IL_9B0S_194 | No text annotation | ||
| IL_9B0S_198 | No text annotation | ||
| IL_9B0S_199 | Double sheared with non-canonical cWW | ||
| IL_9B0S_200 | No text annotation | ||
| IL_9B0S_201 | No text annotation | ||
| IL_9B0S_202 | Single bulged A | ||
| IL_9B0S_203 | Single stack bend | ||
| IL_9B0S_206 | No text annotation | ||
| IL_9B0S_208 | No text annotation | ||
| IL_9B0S_212 | Isolated non-canonical cWW pair | ||
| IL_9B0S_213 | No text annotation | ||
| IL_9B0S_214 | Major groove intercalation | ||
| IL_9B0S_217 | No text annotation | ||
| IL_9B0S_218 | No text annotation | ||
| IL_9B0S_223 | No text annotation | ||
| IL_9B0S_224 | Isolated non-canonical cWW pair | ||
| IL_9B0S_226 | Single stack bend | ||
| IL_9B0S_227 | Isolated non-canonical cWW pair | ||
| IL_9B0S_228 | Isolated non-canonical cWW pair | ||
| IL_9B0S_230 | Single bulged U | ||
| IL_9B0S_239 | Isolated cWH basepair | ||
| IL_9B0S_240 | Minor groove platform | ||
| IL_9B0S_248 | Isolated non-canonical cWW pair | ||
| IL_9B0S_249 | No text annotation | ||
| IL_9B0S_250 | No text annotation | ||
| IL_9B0S_251 | No text annotation | ||
| IL_9B0S_252 | No text annotation | ||
| IL_9B0S_257 | Single bulged A | ||
| IL_9B0S_260 | Tandem non-canonical cWW pairs | ||
| IL_9B0S_261 | No text annotation | ||
| IL_9B0S_262 | No text annotation | ||
| IL_9B0S_263 | Single bulged G | ||
| IL_9B0S_264 | Isolated non-canonical cWW pair | ||
| IL_9B0S_267 | Isolated non-canonical cWW pair | ||
| IL_9B0S_268 | No text annotation | ||
| IL_9B0S_269 | Single stack bend | ||
| IL_9B0S_278 | Isolated non-canonical cWW pair | ||
| IL_9B0S_281 | Triple sheared | ||
| IL_9B0S_282 | No text annotation | ||
| IL_9B0S_283 | No text annotation | ||
| IL_9B0S_293 | No text annotation | ||
| IL_9B0S_307 | No text annotation | ||
| IL_9B0S_308 | No text annotation | ||
| IL_9B0S_309 | No text annotation | ||
| IL_9B0S_311 | No text annotation | ||
| IL_9B0S_319 | No text annotation | ||
| IL_9B0S_326 | Isolated non-canonical cWW pair | ||
| IL_9B0S_327 | Single stack bend | ||
| IL_9B0S_328 | Minor groove platform | ||
| IL_9B0S_356 | Isolated cWH basepair | ||
| IL_9B0S_359 | No text annotation | ||
| IL_9B0S_369 | No text annotation | ||
| IL_9B0S_380 | Tandem non-canonical cWW pairs | ||
| IL_9B0S_398 | No text annotation | ||
| IL_9B0S_441 | No text annotation | ||
| IL_9B0S_448 | Single stack bend | ||
| IL_9B0S_449 | Single bulged C | ||
| IL_9B0S_493 | No text annotation | ||
| IL_9B0S_494 | Single stack bend | ||
| IL_9B0S_495 | Multiple bulged bases | ||
| IL_9B0S_496 | Tandem non-canonical cWW pairs | ||
| IL_9B0S_559 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9B0S_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
| J3_9B0S_002 | 1/L5/196:199, 1/L5/215:228, 1/L5/240:244 | No text annotation | ||
| J3_9B0S_003 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_9B0S_004 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | geometric J3_8P9A_046 J3_68715.1 | |
| J3_9B0S_005 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8CRE_006 NA | |
| J3_9B0S_007 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation | ||
| J3_9B0S_008 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | homologous J3_8P9A_049 J3_46658.1 | |
| J3_9B0S_009 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation | homologous J3_8CRE_010 NA | |
| J3_9B0S_010 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_9B0S_012 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | homologous J3_8P9A_053 J3_05025.1 | |
| J3_9B0S_013 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | homologous J3_8CRE_014 NA | |
| J3_9B0S_014 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_9B0S_015 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation | ||
| J3_9B0S_016 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | ||
| J3_9B0S_017 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | homologous J3_8P9A_087 J3_05348.1 | |
| J3_9B0S_018 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | homologous J3_8CRE_018 NA | |
| J3_9B0S_019 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_9B0S_020 | 1/L5/4091:4097, 1/L5/4112:4129, 1/L5/4155:4158 | No text annotation | ||
| J3_9B0S_021 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | homologous J3_8CRE_021 NA | |
| J3_9B0S_022 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_9B0S_023 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | homologous J3_8CRE_023 NA | |
| J3_9B0S_024 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | ||
| J3_9B0S_025 | 1/L5/4970:4975, 1/L5/4983:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_9B0S_026 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_9B0S_027 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8CRE_027 NA | |
| J3_9B0S_028 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | homologous J3_8CRE_071 J3_58657.1 | |
| J3_9B0S_029 | 1/S2/682:684, 1/S2/918:922, 1/S2/1022:1023 | No text annotation | geometric J3_8P9A_071 J3_01633.1 | |
| J3_9B0S_030 | 1/S2/682:684, 1/S2/918:923, 1/S2/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_9B0S_032 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_9B0S_033 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_9B0S_034 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_8P9A_076 J3_85722.1 | |
| J3_9B0S_036 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_8CRE_080 J3_88451.1 | |
| J3_9B0S_038 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_9B0S_039 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_9B0S_040 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_9B0S_042 | 1/l5/112:116, 1/l5/155:160, 1/l5/275:278 | No text annotation | ||
| J3_9B0S_043 | 1/l5/351:367, 1/l5/374:379, 1/l8/21:24 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_9B0S_044 | 1/l5/380:387, 1/l5/414:415, 1/l8/19:20 | No text annotation | geometric J3_8P9A_046 J3_68715.1 | |
| J3_9B0S_045 | 1/l5/380:390, 1/l5/401:415, 1/l8/19:20 | No text annotation | homologous J3_8CRE_006 NA | |
| J3_9B0S_046 | 1/l5/451:455, 1/l5/701:705, 1/l5/1292:1296 | No text annotation | ||
| J3_9B0S_047 | 1/l5/712:713, 1/l5/955:976, 1/l5/1278:1284 | No text annotation | ||
| J3_9B0S_048 | 1/l5/1531:1537, 1/l5/1622:1624, 1/l5/1640:1643 | No text annotation | homologous J3_8CRE_009 NA | |
| J3_9B0S_049 | 1/l5/1546:1548, 1/l5/1580:1584, 1/l5/1609:1612 | No text annotation | homologous J3_8CRE_010 NA | |
| J3_9B0S_050 | 1/l5/1726:1727, 1/l5/1802:1806, 1/l5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_84137.1 | |
| J3_9B0S_051 | 1/l5/1969:1971, 1/l5/1995:2001, 1/l5/2016:2018 | No text annotation | homologous J3_8P9A_052 J3_37832.1 | |
| J3_9B0S_052 | 1/l5/2393:2399, 1/l5/2805:2807, 1/l5/2819:2822 | No text annotation | homologous J3_8P9A_053 J3_05025.1 | |
| J3_9B0S_053 | 1/l5/2402:2405, 1/l5/2785:2791, 1/l5/2800:2802 | No text annotation | homologous J3_8CRE_014 NA | |
| J3_9B0S_054 | 1/l5/2440:2445, 1/l5/2515:2519, 1/l5/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_9B0S_055 | 1/l5/2451:2456, 1/l5/2465:2476, 1/l5/2501:2508 | No text annotation | homologous J3_8CRE_016 NA | |
| J3_9B0S_056 | 1/l5/2551:2555, 1/l5/2572:2575, 1/l5/2757:2767 | No text annotation | ||
| J3_9B0S_057 | 1/l5/2575:2576, 1/l5/2585:2589, 1/l5/2756:2757 | No text annotation | homologous J3_8P9A_087 J3_05348.1 | |
| J3_9B0S_058 | 1/l5/2598:2602, 1/l5/2737:2738, 1/l5/2742:2747 | No text annotation | homologous J3_8CRE_018 NA | |
| J3_9B0S_059 | 1/l5/3937:3939, 1/l5/4074:4078, 1/l5/4168:4173 | Kink-turn 3-way junction | geometric J3_5J7L_044 NA | |
| J3_9B0S_060 | 1/l5/4091:4097, 1/l5/4112:4129, 1/l5/4155:4158 | No text annotation | ||
| J3_9B0S_061 | 1/l5/4228:4230, 1/l5/4331:4342, 1/l5/4370:4375 | No text annotation | homologous J3_8CRE_021 NA | |
| J3_9B0S_062 | 1/l5/4241:4243, 1/l5/4267:4269, 1/l5/4278:4283 | No text annotation | homologous J3_8P9A_062 J3_05327.1 | |
| J3_9B0S_063 | 1/l5/4463:4466, 1/l5/4491:4493, 1/l5/4507:4513 | No text annotation | homologous J3_8CRE_023 NA | |
| J3_9B0S_064 | 1/l5/4751:4754, 1/l5/4879:4883, 1/l5/4936:4948 | No text annotation | ||
| J3_9B0S_065 | 1/l5/4970:4972, 1/l5/4986:4991, 1/l5/5060:5063 | No text annotation | ||
| J3_9B0S_066 | 1/l7/9:14, 1/l7/65:66, 1/l7/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_9B0S_067 | 1/l8/44:45, 1/l8/58:64, 1/l8/95:99 | No text annotation | homologous J3_8CRE_027 NA | |
| J3_9B0S_068 | 1/s2/40:41, 1/s2/481:487, 1/s2/512:514 | No text annotation | geometric J3_8P9A_068 J3_58657.1 | |
| J3_9B0S_069 | 1/s2/40:47, 1/s2/479:487, 1/s2/512:514 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_9B0S_070 | 1/s2/682:684, 1/s2/918:922, 1/s2/1022:1023 | No text annotation | geometric J3_8P9A_071 J3_01633.1 | |
| J3_9B0S_071 | 1/s2/682:684, 1/s2/918:923, 1/s2/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.5 | |
| J3_9B0S_072 | 1/s2/816:819, 1/s2/829:831, 1/s2/843:848 | No text annotation | homologous J3_8P9A_073 J3_97642.2 | |
| J3_9B0S_073 | 1/s2/938:941, 1/s2/985:993, 1/s2/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_9B0S_074 | 1/s2/1094:1096, 1/s2/1136:1140, 1/s2/1147:1151 | No text annotation | ||
| J3_9B0S_075 | 1/s2/1218:1221, 1/s2/1645:1651, 1/s2/1673:1680 | No text annotation | homologous J3_8P9A_076 J3_85722.1 | |
| J3_9B0S_076 | 1/s2/1225:1228, 1/s2/1530:1532, 1/s2/1638:1641 | No text annotation | homologous J3_8CRE_079 J3_44359.1 | |
| J3_9B0S_077 | 1/s2/1237:1244, 1/s2/1255:1266, 1/s2/1516:1520 | No text annotation | homologous J3_8CRE_080 J3_88451.1 | |
| J3_9B0S_078 | 1/s2/1272:1277, 1/s2/1320:1324, 1/s2/1504:1510 | No text annotation | homologous J3_8CRE_081 J3_87797.2 | |
| J3_9B0S_079 | 1/s2/1340:1345, 1/s2/1384:1389, 1/s2/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_9B0S_080 | 1/s2/1350:1351, 1/s2/1360:1363, 1/s2/1375:1379 | No text annotation | homologous J3_8CRE_083 J3_76043.4 | |
| J3_9B0S_081 | 1/s2/1391:1395, 1/s2/1450:1456, 1/s2/1470:1479 | No text annotation | ||
| J3_9B0S_082 | 1/s2/1532:1536, 1/s2/1597:1604, 1/s2/1635:1638 | No text annotation | homologous J3_8CRE_086 J3_03192.1 | |
| J4_9B0S_003 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_9B0S_004 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_9B0S_005 | 1/L5/981:983, 1/L5/1070:1072, 1/L5/1240:1243, 1/L5/1268:1273 | No text annotation | ||
| J4_9B0S_006 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | ||
| J4_9B0S_007 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | homologous J4_8CRE_004 NA | |
| J4_9B0S_008 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | ||
| J4_9B0S_009 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_9B0S_010 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_9B0S_011 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | ||
| J4_9B0S_012 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | ||
| J4_9B0S_014 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_9B0S_015 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_8CRE_022 J4_14595.1 | |
| J4_9B0S_016 | 1/S2/685:746, 1/S2/796:800, 1/S2/865:874, 1/S2/912:917 | No text annotation | ||
| J4_9B0S_017 | 1/aP/7:10, 1/aP/25:27, 1/aP/43:49, 1/aP/65:66 | tRNA junction | homologous J4_6CFJ_015 J4_58311.1 | |
| J4_9B0S_018 | 1/l5/111:112, 1/l5/278:283, 1/l5/304:310, 1/l5/327:330 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_9B0S_019 | 1/l5/196:199, 1/l5/215:222, 1/l5/226:228, 1/l5/240:244 | No text annotation | ||
| J4_9B0S_020 | 1/l5/981:983, 1/l5/1070:1072, 1/l5/1240:1243, 1/l5/1268:1273 | No text annotation | ||
| J4_9B0S_021 | 1/l5/2365:2371, 1/l5/2389:2391, 1/l5/2824:2829, 1/l5/3856:3857 | No text annotation | ||
| J4_9B0S_022 | 1/l5/2406:2410, 1/l5/2434:2439, 1/l5/2538:2539, 1/l5/2777:2784 | No text annotation | homologous J4_8CRE_004 NA | |
| J4_9B0S_023 | 1/l5/2618:2619, 1/l5/2637:2642, 1/l5/2692:2698, 1/l5/2718:2719 | No text annotation | ||
| J4_9B0S_024 | 1/l5/3634:3638, 1/l5/3650:3654, 1/l5/3690:3694, 1/l5/3821:3826 | No text annotation | homologous J4_8P9A_017 J4_78485.1 | |
| J4_9B0S_025 | 1/l5/3696:3698, 1/l5/3752:3753, 1/l5/3771:3780, 1/l5/3814:3819 | No text annotation | homologous J4_8P9A_018 J4_42306.1 | |
| J4_9B0S_026 | 1/l5/4231:4235, 1/l5/4289:4291, 1/l5/4318:4319, 1/l5/4328:4330 | No text annotation | ||
| J4_9B0S_027 | 1/l5/4231:4235, 1/l5/4289:4293, 1/l5/4317:4319, 1/l5/4328:4330 | No text annotation | homologous J4_8CRE_008 NA | |
| J4_9B0S_028 | 1/l5/4587:4590, 1/l5/4620:4621, 1/l5/4676:4678, 1/l5/4712:4715 | No text annotation | ||
| J4_9B0S_029 | 1/pE/7:10, 1/pE/25:27, 1/pE/43:49, 1/pE/65:66 | tRNA junction | homologous J4_1IL2_001 J4_58311.1 | |
| J4_9B0S_030 | 1/s2/98:106, 1/s2/355:357, 1/s2/405:409, 1/s2/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_9B0S_031 | 1/s2/671:673, 1/s2/1032:1037, 1/s2/1078:1089, 1/s2/1160:1161 | No text annotation | homologous J4_8CRE_022 J4_14595.1 | |
| J4_9B0S_032 | 1/s2/685:746, 1/s2/796:800, 1/s2/865:874, 1/s2/912:917 | No text annotation | ||
| J5_9B0S_001 | 1/L5/20:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:137 | No text annotation | ||
| J5_9B0S_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | homologous J5_8CRE_002 NA | |
| J5_9B0S_003 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | homologous J5_8CRE_004 NA | |
| J5_9B0S_004 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3773, 1/L5/3775:3780, 1/L5/3814:3819 | No text annotation | ||
| J5_9B0S_005 | 1/L5/3902:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4558 | No text annotation | ||
| J5_9B0S_006 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_9B0S_007 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_9B0S_008 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation | homologous J5_8CRE_020 J5_58574.1 | |
| J5_9B0S_009 | 1/S2/125:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:338 | No text annotation | ||
| J5_9B0S_010 | 1/l5/20:21, 1/l8/35:42, 1/l8/101:106, 1/l8/113:114, 1/l8/136:137 | No text annotation | ||
| J5_9B0S_011 | 1/l5/1335:1340, 1/l5/1516:1519, 1/l5/1658:1661, 1/l5/2288:2290, 1/l5/2345:2351 | No text annotation | homologous J5_8CRE_002 NA | |
| J5_9B0S_012 | 1/l5/2855:2863, 1/l5/2887:2888, 1/l5/3613:3614, 1/l5/3618:3626, 1/l5/3835:3837 | No text annotation | homologous J5_8CRE_004 NA | |
| J5_9B0S_013 | 1/l5/3696:3698, 1/l5/3752:3753, 1/l5/3771:3773, 1/l5/3775:3780, 1/l5/3814:3819 | No text annotation | ||
| J5_9B0S_014 | 1/l5/3902:3910, 1/l5/4392:4400, 1/l5/4444:4453, 1/l5/4528:4534, 1/l5/4552:4558 | No text annotation | ||
| J5_9B0S_015 | 1/l5/3920:3923, 1/l5/4188:4191, 1/l5/4204:4205, 1/l5/4227:4228, 1/l5/4375:4381 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_9B0S_016 | 1/s2/30:34, 1/s2/521:527, 1/s2/558:565, 1/s2/585:595, 1/s2/641:644 | No text annotation | ||
| J5_9B0S_017 | 1/s2/53:56, 1/s2/89:96, 1/s2/434:436, 1/s2/457:459, 1/s2/470:474 | No text annotation | homologous J5_8CRE_020 J5_58574.1 | |
| J5_9B0S_018 | 1/s2/125:129, 1/s2/183:185, 1/s2/214:215, 1/s2/310:312, 1/s2/337:338 | No text annotation | ||
| J6_9B0S_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_9B0S_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | ||
| J6_9B0S_003 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J6_9B0S_004 | 1/l5/21:26, 1/l5/57:67, 1/l5/74:78, 1/l5/105:109, 1/l5/332:339, 1/l8/33:35 | No text annotation | ||
| J6_9B0S_005 | 1/l5/1352:1355, 1/l5/1384:1388, 1/l5/1395:1399, 1/l5/1418:1421, 1/l5/1464:1466, 1/l5/1499:1504 | No text annotation | ||
| J6_9B0S_006 | 1/l5/3920:3923, 1/l5/4188:4191, 1/l5/4204:4205, 1/l5/4227:4230, 1/l5/4331:4342, 1/l5/4370:4381 | No text annotation | ||
| J7_9B0S_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation | ||
| J7_9B0S_002 | 1/l5/1666:1671, 1/l5/1684:1685, 1/l5/1852:1855, 1/l5/1879:1884, 1/l5/1895:1899, 1/l5/2077:2078, 1/l5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9B0S_006 | No text annotation | ||
| J3_9B0S_011 | No text annotation | ||
| J3_9B0S_031 | No text annotation | ||
| J3_9B0S_035 | No text annotation | ||
| J3_9B0S_037 | No text annotation | ||
| J3_9B0S_041 | No text annotation | ||
| J4_9B0S_001 | tRNA junction | ||
| J4_9B0S_002 | tRNA junction | ||
| J4_9B0S_013 | tRNA junction |
Coloring options: