HL_9B0S_011

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

9B0S|1|L5|U|224, 9B0S|1|L5|G|225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_011 not in the Motif Atlas

Geometric match to HL_8K0Y_001

Geometric discrepancy: 0.1117

The information below is about HL_8K0Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9B0S|1|L5|C|222
9B0S|1|L5|G|223
9B0S|1|L5|U|224
9B0S|1|L5|G|225
9B0S|1|L5|G|226

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26