3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGCGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B0S_044 not in the Motif Atlas
Geometric match to HL_8XPP_001
Geometric discrepancy: 0.1745
The information below is about HL_8XPP_001
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

9B0S|1|L5|C|2561
9B0S|1|L5|G|2562
9B0S|1|L5|C|2563
9B0S|1|L5|G|2564
9B0S|1|L5|A|2565
9B0S|1|L5|G|2566

Current chains

Chain L5
28S rRNA [Homo sapiens]

Nearby chains

No other chains within 10Å

Coloring options:


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