HL_9B0S_063

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUC

Length

75 nucleotides

Bulged bases

9B0S|1|L5|A|3962, 9B0S|1|L5|G|3974, 9B0S|1|L5|C|3978, 9B0S|1|L5|C|3979, 9B0S|1|L5|G|3980, 9B0S|1|L5|G|3981, 9B0S|1|L5|C|3982, 9B0S|1|L5|G|3983, 9B0S|1|L5|C|3984, 9B0S|1|L5|C|3985, 9B0S|1|L5|G|4018, 9B0S|1|L5|G|4019, 9B0S|1|L5|U|4020, 9B0S|1|L5|C|4021, 9B0S|1|L5|C|4022, 9B0S|1|L5|G|4023, 9B0S|1|L5|C|4024, 9B0S|1|L5|C|4025, 9B0S|1|L5|G|4026, 9B0S|1|L5|G|4027, 9B0S|1|L5|C|4028, 9B0S|1|L5|C|4029, 9B0S|1|L5|C|4030, 9B0S|1|L5|U|4031, 9B0S|1|L5|G|4032, 9B0S|1|L5|C|4033, 9B0S|1|L5|G|4035, 9B0S|1|L5|C|4038, 9B0S|1|L5|G|4043, 9B0S|1|L5|U|4044, 9B0S|1|L5|A|4048, 9B0S|1|L5|C|4052, 9B0S|1|L5|C|4054, 9B0S|1|L5|C|4057, 9B0S|1|L5|U|4058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0S|1|L5|G|3953
9B0S|1|L5|A|3954
9B0S|1|L5|G|3955
9B0S|1|L5|G|3956
9B0S|1|L5|U|3957
9B0S|1|L5|G|3958
9B0S|1|L5|U|3959
9B0S|1|L5|A|3960
9B0S|1|L5|G|3961
9B0S|1|L5|A|3962
9B0S|1|L5|A|3963
9B0S|1|L5|U|3964
9B0S|1|L5|A|3965
9B0S|1|L5|A|3966
9B0S|1|L5|G|3967
9B0S|1|L5|U|3968
9B0S|1|L5|G|3969
9B0S|1|L5|G|3970
9B0S|1|L5|G|3971
9B0S|1|L5|A|3972
9B0S|1|L5|G|3973
9B0S|1|L5|G|3974
9B0S|1|L5|C|3975
9B0S|1|L5|C|3976
9B0S|1|L5|C|3977
9B0S|1|L5|C|3978
9B0S|1|L5|C|3979
9B0S|1|L5|G|3980
9B0S|1|L5|G|3981
9B0S|1|L5|C|3982
9B0S|1|L5|G|3983
9B0S|1|L5|C|3984
9B0S|1|L5|C|3985
9B0S|1|L5|G|4018
9B0S|1|L5|G|4019
9B0S|1|L5|U|4020
9B0S|1|L5|C|4021
9B0S|1|L5|C|4022
9B0S|1|L5|G|4023
9B0S|1|L5|C|4024
9B0S|1|L5|C|4025
9B0S|1|L5|G|4026
9B0S|1|L5|G|4027
9B0S|1|L5|C|4028
9B0S|1|L5|C|4029
9B0S|1|L5|C|4030
9B0S|1|L5|U|4031
9B0S|1|L5|G|4032
9B0S|1|L5|C|4033
9B0S|1|L5|G|4034
9B0S|1|L5|G|4035
9B0S|1|L5|G|4036
9B0S|1|L5|C|4037
9B0S|1|L5|C|4038
9B0S|1|L5|G|4039
9B0S|1|L5|C|4040
9B0S|1|L5|C|4041
9B0S|1|L5|G|4042
9B0S|1|L5|G|4043
9B0S|1|L5|U|4044
9B0S|1|L5|G|4045
9B0S|1|L5|A|4046
9B0S|1|L5|A|4047
9B0S|1|L5|A|4048
9B0S|1|L5|U|4049
9B0S|1|L5|A|4050
9B0S|1|L5|C|4051
9B0S|1|L5|C|4052
9B0S|1|L5|A|4053
9B0S|1|L5|C|4054
9B0S|1|L5|U|4055
9B0S|1|L5|A|4056
9B0S|1|L5|C|4057
9B0S|1|L5|U|4058
9B0S|1|L5|C|4059

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain Et

Transfer RNA; tRNA

Chain Lz

60S ribosomal protein L10a

Chain SB

40S ribosomal protein S3a

Chain sJ

40S ribosomal protein S9