HL_9B0S_068

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_068 not in the Motif Atlas

Homologous match to HL_8P9A_167

Geometric discrepancy: 0.1787

The information below is about HL_8P9A_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9B0S|1|L5|G|4250
9B0S|1|L5|A|4251
9B0S|1|L5|C|4252
9B0S|1|L5|A|4253
9B0S|1|L5|G|4254
9B0S|1|L5|A|4255
9B0S|1|L5|A|4256
9B0S|1|L5|A|4257
9B0S|1|L5|C|4258

Current chains

Chain L5

28S rRNA [Homo sapiens]

Nearby chains

Chain LJ

60S ribosomal protein L11