HL_9B0S_096

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

9B0S|1|S2|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_096 not in the Motif Atlas

Homologous match to HL_8CRE_193

Geometric discrepancy: 0.1623

The information below is about HL_8CRE_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9B0S|1|S2|G|156
9B0S|1|S2|U|157
9B0S|1|S2|A|158
9B0S|1|S2|A|159
9B0S|1|S2|U|160
9B0S|1|S2|U|161
9B0S|1|S2|C|162

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain CF

Putative elongation factor 1-alpha-like 3

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24