HL_9B0S_122

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

9B0S|1|S2|C|1423

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_122 not in the Motif Atlas

Homologous match to HL_8CRE_220

Geometric discrepancy: 0.3765

The information below is about HL_8CRE_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9B0S|1|S2|C|1416
9B0S|1|S2|C|1417
9B0S|1|S2|C|1418
9B0S|1|S2|C|1419
9B0S|1|S2|G|1420
9B0S|1|S2|A|1421
9B0S|1|S2|G|1422
9B0S|1|S2|C|1423
9B0S|1|S2|G|1424

Current chains

Chain S2

18S rRNA [Homo sapiens]

Nearby chains

Chain SQ

Small ribosomal subunit protein uS9

Chain ST

40S ribosomal protein S19