HL_9B0S_131
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_131 not in the Motif Atlas
- Homologous match to HL_4YYE_003
- Geometric discrepancy: 0.1938
- The information below is about HL_4YYE_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.2
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9B0S|1|aP|G|53
9B0S|1|aP|U|54
9B0S|1|aP|U|55
9B0S|1|aP|C|56
9B0S|1|aP|G|57
9B0S|1|aP|A|58
9B0S|1|aP|A|59
9B0S|1|aP|A|60
9B0S|1|aP|C|61
Current chains
- Chain aP
- A/P site tRNA [Homo sapiens]
Nearby chains
- Chain l5
- Large subunit ribosomal RNA; LSU rRNA
- Chain lI
- Ribosomal protein uL16-like
Coloring options: