HL_9B0S_147

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

9B0S|1|l5|C|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_147 not in the Motif Atlas

Homologous match to HL_8CRE_013

Geometric discrepancy: 0.0687

The information below is about HL_8CRE_013

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

9B0S|1|l5|U|1317
9B0S|1|l5|C|1318
9B0S|1|l5|U|1319
9B0S|1|l5|U|1320
9B0S|1|l5|G|1321
9B0S|1|l5|A|1322
9B0S|1|l5|A|1323
9B0S|1|l5|A|1324
9B0S|1|l5|C|1325
9B0S|1|l5|A|1326

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lB

Large ribosomal subunit protein uL3

Chain la

60S ribosomal protein L27a

Chain le

60S ribosomal protein L32