HL_9B0S_162

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_162 not in the Motif Atlas

Homologous match to HL_8CRE_027

Geometric discrepancy: 0.1831

The information below is about HL_8CRE_027

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9B0S|1|l5|U|2006
9B0S|1|l5|G|2007
9B0S|1|l5|U|2008
9B0S|1|l5|A|2009
9B0S|1|l5|A|2010
9B0S|1|l5|C|2011
9B0S|1|l5|A|2012
9B0S|1|l5|A|2013

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain cB

Elongation factor 2

Chain lm

Large ribosomal subunit protein eL40

Chain ls

60S acidic ribosomal protein P0