HL_9B0S_163

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGCCGGAGCCCCGCGGACGCUACG

Length

48 nucleotides

Bulged bases

9B0S|1|l5|G|2096, 9B0S|1|l5|U|2097, 9B0S|1|l5|C|2255, 9B0S|1|l5|C|2257, 9B0S|1|l5|C|2266, 9B0S|1|l5|U|2267, 9B0S|1|l5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0S|1|l5|C|2087
9B0S|1|l5|A|2088
9B0S|1|l5|G|2089
9B0S|1|l5|U|2090
9B0S|1|l5|C|2091
9B0S|1|l5|G|2092
9B0S|1|l5|A|2093
9B0S|1|l5|G|2094
9B0S|1|l5|A|2095
9B0S|1|l5|G|2096
9B0S|1|l5|U|2097
9B0S|1|l5|G|2098
9B0S|1|l5|G|2099
9B0S|1|l5|A|2100
9B0S|1|l5|C|2101
9B0S|1|l5|G|2102
9B0S|1|l5|G|2103
9B0S|1|l5|G|2104
9B0S|1|l5|A|2105
9B0S|1|l5|G|2106
9B0S|1|l5|C|2107
9B0S|1|l5|G|2108
9B0S|1|l5|G|2109
9B0S|1|l5|C|2110
9B0S|1|l5|G|2111
9B0S|1|l5|G|2112
9B0S|1|l5|C|2249
9B0S|1|l5|C|2250
9B0S|1|l5|G|2251
9B0S|1|l5|G|2252
9B0S|1|l5|A|2253
9B0S|1|l5|G|2254
9B0S|1|l5|C|2255
9B0S|1|l5|C|2256
9B0S|1|l5|C|2257
9B0S|1|l5|C|2258
9B0S|1|l5|G|2259
9B0S|1|l5|C|2260
9B0S|1|l5|G|2261
9B0S|1|l5|G|2262
9B0S|1|l5|A|2263
9B0S|1|l5|C|2264
9B0S|1|l5|G|2265
9B0S|1|l5|C|2266
9B0S|1|l5|U|2267
9B0S|1|l5|A|2268
9B0S|1|l5|C|2269
9B0S|1|l5|G|2270

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lC

60S ribosomal protein L4

Chain lE

Large ribosomal subunit protein eL6

Chain lF

60S ribosomal protein L7

Chain lQ

60S ribosomal protein L18

Chain lb

Large ribosomal subunit protein eL29

Chain lr

60S ribosomal protein L28