HL_9B0S_174

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGUUCCGG

Length

9 nucleotides

Bulged bases

9B0S|1|l5|U|2707, 9B0S|1|l5|U|2708, 9B0S|1|l5|C|2709, 9B0S|1|l5|G|2711

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0S|1|l5|C|2704
9B0S|1|l5|G|2705
9B0S|1|l5|G|2706
9B0S|1|l5|U|2707
9B0S|1|l5|U|2708
9B0S|1|l5|C|2709
9B0S|1|l5|C|2710
9B0S|1|l5|G|2711
9B0S|1|l5|G|2712

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lR

60S ribosomal protein L19

Chain lU

Heparin-binding protein HBp15

Chain lX

60S ribosomal protein L23a