HL_9B0S_176
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 9B0S|1|l5|C|2794, 9B0S|1|l5|G|2796, 9B0S|1|l5|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_176 not in the Motif Atlas
- Homologous match to HL_8CRE_040
- Geometric discrepancy: 0.0733
- The information below is about HL_8CRE_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89567.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9B0S|1|l5|C|2792
9B0S|1|l5|G|2793
9B0S|1|l5|C|2794
9B0S|1|l5|A|2795
9B0S|1|l5|G|2796
9B0S|1|l5|C|2797
9B0S|1|l5|A|2798
9B0S|1|l5|G|2799
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain lC
- 60S ribosomal protein L4
- Chain lP
- 60S ribosomal protein L17
- Chain lj
- 60S ribosomal protein L37
- Chain ll
- 60S ribosomal protein L39
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