3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
9B0S|1|l5|U|2874
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B0S_178 not in the Motif Atlas
Homologous match to HL_8P9A_154
Geometric discrepancy: 0.0943
The information below is about HL_8P9A_154
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_61337.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
49

Unit IDs

9B0S|1|l5|C|2872
9B0S|1|l5|U|2873
9B0S|1|l5|U|2874
9B0S|1|l5|C|2875
9B0S|1|l5|G|2876
9B0S|1|l5|G|2877

Current chains

Chain l5
28S rRNA [Homo sapiens]

Nearby chains

Chain ln
60S ribosomal protein L41
Chain lp
60S ribosomal protein L37a
Chain s2
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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