3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGGAACGGGC
Length
10 nucleotides
Bulged bases
9B0S|1|l5|A|3876, 9B0S|1|l5|A|3877, 9B0S|1|l5|C|3878
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B0S_188 not in the Motif Atlas
Homologous match to HL_8P9A_162
Geometric discrepancy: 0.0701
The information below is about HL_8P9A_162
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_78372.1
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
10

Unit IDs

9B0S|1|l5|G|3873
9B0S|1|l5|G|3874
9B0S|1|l5|G|3875
9B0S|1|l5|A|3876
9B0S|1|l5|A|3877
9B0S|1|l5|C|3878
9B0S|1|l5|G|3879
9B0S|1|l5|G|3880
9B0S|1|l5|G|3881
9B0S|1|l5|C|3882

Current chains

Chain l5
28S rRNA [Homo sapiens]

Nearby chains

Chain lB
Large ribosomal subunit protein uL3
Chain le
60S ribosomal protein L32

Coloring options:


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