HL_9B0S_188
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 9B0S|1|l5|A|3876, 9B0S|1|l5|A|3877, 9B0S|1|l5|C|3878
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_188 not in the Motif Atlas
- Homologous match to HL_8P9A_162
- Geometric discrepancy: 0.0701
- The information below is about HL_8P9A_162
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9B0S|1|l5|G|3873
9B0S|1|l5|G|3874
9B0S|1|l5|G|3875
9B0S|1|l5|A|3876
9B0S|1|l5|A|3877
9B0S|1|l5|C|3878
9B0S|1|l5|G|3879
9B0S|1|l5|G|3880
9B0S|1|l5|G|3881
9B0S|1|l5|C|3882
Current chains
- Chain l5
- 28S rRNA [Homo sapiens]
Nearby chains
- Chain lB
- Large ribosomal subunit protein uL3
- Chain le
- 60S ribosomal protein L32
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