HL_9B0S_192

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9B0S|1|l5|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_192 not in the Motif Atlas

Homologous match to HL_8P9A_165

Geometric discrepancy: 0.112

The information below is about HL_8P9A_165

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

9B0S|1|l5|C|4193
9B0S|1|l5|U|4194
9B0S|1|l5|G|4195
9B0S|1|l5|G|4196
9B0S|1|l5|G|4197
9B0S|1|l5|G|4198
9B0S|1|l5|C|4199
9B0S|1|l5|G|4200
9B0S|1|l5|G|4201

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lI

Ribosomal protein uL16-like

Chain lb

Large ribosomal subunit protein eL29