HL_9B0S_205

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9B0S|1|l5|G|4694, 9B0S|1|l5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_205 not in the Motif Atlas

Homologous match to HL_8CRE_066

Geometric discrepancy: 0.0894

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9B0S|1|l5|C|4688
9B0S|1|l5|U|4689
9B0S|1|l5|G|4690
9B0S|1|l5|A|4691
9B0S|1|l5|A|4692
9B0S|1|l5|C|4693
9B0S|1|l5|G|4694
9B0S|1|l5|C|4695
9B0S|1|l5|C|4696
9B0S|1|l5|U|4697
9B0S|1|l5|C|4698
9B0S|1|l5|U|4699
9B0S|1|l5|A|4700
9B0S|1|l5|A|4701
9B0S|1|l5|G|4702

Current chains

Chain l5

28S rRNA [Homo sapiens]

Nearby chains

Chain lH

60S ribosomal protein L9

Chain lO

60S ribosomal protein L13a

Chain lm

Large ribosomal subunit protein eL40