HL_9B0S_213
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_213 not in the Motif Atlas
- Homologous match to HL_8CRE_074
- Geometric discrepancy: 0.1531
- The information below is about HL_8CRE_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9B0S|1|l8|C|47
9B0S|1|l8|A|48
9B0S|1|l8|G|49
9B0S|1|l8|C|50
9B0S|1|l8|U|51
9B0S|1|l8|A|52
9B0S|1|l8|G|53
9B0S|1|l8|C|54
9B0S|1|l8|U|55
9B0S|1|l8|G|56
Current chains
- Chain l8
- 5.8S rRNA [Homo sapiens]
Nearby chains
- Chain l5
- Large subunit ribosomal RNA; LSU rRNA
- Chain lX
- 60S ribosomal protein L23a
- Chain lh
- 60S ribosomal protein L35
- Chain lj
- 60S ribosomal protein L37
- Chain ll
- 60S ribosomal protein L39
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