HL_9B0S_215

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

9B0S|1|l8|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_215 not in the Motif Atlas

Homologous match to HL_8P9A_188

Geometric discrepancy: 0.1873

The information below is about HL_8P9A_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

9B0S|1|l8|C|107
9B0S|1|l8|A|108
9B0S|1|l8|C|109
9B0S|1|l8|U|110
9B0S|1|l8|U|111
9B0S|1|l8|G|112

Current chains

Chain l8

5.8S rRNA [Homo sapiens]

Nearby chains

Chain l5

Large subunit ribosomal RNA; LSU rRNA

Chain lX

60S ribosomal protein L23a

Chain lj

60S ribosomal protein L37

Chain ll

60S ribosomal protein L39