HL_9B0S_227
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UCAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_227 not in the Motif Atlas
- Homologous match to HL_8CRE_199
- Geometric discrepancy: 0.1882
- The information below is about HL_8CRE_199
- Detailed Annotation
- GNRA variation
- Broad Annotation
- GNRA variation
- Motif group
- HL_37824.8
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 352
Unit IDs
9B0S|1|s2|U|416
9B0S|1|s2|C|417
9B0S|1|s2|A|418
9B0S|1|s2|G|419
9B0S|1|s2|G|420
9B0S|1|s2|G|421
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain sC
- 40S ribosomal protein S2
- Chain sJ
- 40S ribosomal protein S9
- Chain sL
- 40S ribosomal protein S11
- Chain sW
- 40S ribosomal protein S15a
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