HL_9B0S_229

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9B0S|1|s2|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_229 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.1461

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9B0S|1|s2|C|462
9B0S|1|s2|C|463
9B0S|1|s2|A|464
9B0S|1|s2|A|465
9B0S|1|s2|G|466
9B0S|1|s2|G|467

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains

Chain cB

Elongation factor 2

Chain lV

60S ribosomal protein L23

Chain sG

40S ribosomal protein S6