3D structure

PDB id
9B0S (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human top-top di-ribosome structure (Composite map)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CCCGAGCCG
Length
9 nucleotides
Bulged bases
9B0S|1|s2|G|836, 9B0S|1|s2|G|838, 9B0S|1|s2|C|840
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B0S_236 not in the Motif Atlas
Homologous match to HL_8P9A_207
Geometric discrepancy: 0.5756
The information below is about HL_8P9A_207
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_89167.1
Basepair signature
cWW-F-F
Number of instances in this motif group
20

Unit IDs

9B0S|1|s2|C|833
9B0S|1|s2|C|834
9B0S|1|s2|C|835
9B0S|1|s2|G|836
9B0S|1|s2|A|837
9B0S|1|s2|G|838
9B0S|1|s2|C|839
9B0S|1|s2|C|840
9B0S|1|s2|G|841

Current chains

Chain s2
18S rRNA [Homo sapiens]

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain LG
60S ribosomal protein L7a
Chain sE
Small ribosomal subunit protein eS4, X isoform
Chain sJ
40S ribosomal protein S9
Chain sY
40S ribosomal protein S24

Coloring options:


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