HL_9B0S_236
3D structure
- PDB id
- 9B0S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ human top-top di-ribosome structure (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CCCGAGCCG
- Length
- 9 nucleotides
- Bulged bases
- 9B0S|1|s2|G|836, 9B0S|1|s2|G|838, 9B0S|1|s2|C|840
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9B0S_236 not in the Motif Atlas
- Homologous match to HL_8P9A_207
- Geometric discrepancy: 0.5756
- The information below is about HL_8P9A_207
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89167.2
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 22
Unit IDs
9B0S|1|s2|C|833
9B0S|1|s2|C|834
9B0S|1|s2|C|835
9B0S|1|s2|G|836
9B0S|1|s2|A|837
9B0S|1|s2|G|838
9B0S|1|s2|C|839
9B0S|1|s2|C|840
9B0S|1|s2|G|841
Current chains
- Chain s2
- 18S rRNA [Homo sapiens]
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LG
- 60S ribosomal protein L7a
- Chain sE
- Small ribosomal subunit protein eS4, X isoform
- Chain sJ
- 40S ribosomal protein S9
- Chain sY
- 40S ribosomal protein S24
Coloring options: