HL_9B0S_239

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0S_239 not in the Motif Atlas

Homologous match to HL_8P9A_210

Geometric discrepancy: 0.0658

The information below is about HL_8P9A_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9B0S|1|s2|C|994
9B0S|1|s2|G|995
9B0S|1|s2|A|996
9B0S|1|s2|A|997
9B0S|1|s2|A|998
9B0S|1|s2|G|999

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains

Chain sN

40S ribosomal protein S13

Chain sa

40S ribosomal protein S26