HL_9B0S_253

3D structure

PDB id

9B0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human top-top di-ribosome structure (Composite map)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUCGGCCCACGGC

Length

14 nucleotides

Bulged bases

9B0S|1|s2|G|1760, 9B0S|1|s2|C|1762, 9B0S|1|s2|G|1763, 9B0S|1|s2|G|1764, 9B0S|1|s2|C|1765, 9B0S|1|s2|C|1766, 9B0S|1|s2|C|1767, 9B0S|1|s2|A|1768, 9B0S|1|s2|C|1769, 9B0S|1|s2|G|1770

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9B0S|1|s2|G|1759
9B0S|1|s2|G|1760
9B0S|1|s2|U|1761
9B0S|1|s2|C|1762
9B0S|1|s2|G|1763
9B0S|1|s2|G|1764
9B0S|1|s2|C|1765
9B0S|1|s2|C|1766
9B0S|1|s2|C|1767
9B0S|1|s2|A|1768
9B0S|1|s2|C|1769
9B0S|1|s2|G|1770
9B0S|1|s2|G|1771
9B0S|1|s2|C|1772

Current chains

Chain s2

18S rRNA [Homo sapiens]

Nearby chains