HL_9B0W_081

3D structure

PDB id

9B0W (explore in PDB, NAKB, or RNA 3D Hub)

Description

In situ human eEF2-A/P-P/E state 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

9B0W|1|L5|C|5023, 9B0W|1|L5|C|5024, 9B0W|1|L5|U|5026, 9B0W|1|L5|C|5027

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9B0W_081 not in the Motif Atlas

Homologous match to HL_8CRE_070

Geometric discrepancy: 0.5834

The information below is about HL_8CRE_070

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

9B0W|1|L5|C|5021
9B0W|1|L5|U|5022
9B0W|1|L5|C|5023
9B0W|1|L5|C|5024
9B0W|1|L5|C|5025
9B0W|1|L5|U|5026
9B0W|1|L5|C|5027
9B0W|1|L5|G|5028

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LU

Heparin-binding protein HBp15

Chain SI

40S ribosomal protein S8