3D structure

PDB id
9B11 (explore in PDB, NAKB, or RNA 3D Hub)
Description
In situ human unrotated hibernating without CCDC124 state 80S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.77 Å

Loop

Sequence
UCUUGAAACA
Length
10 nucleotides
Bulged bases
9B11|1|L5|C|1325
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9B11_019 not in the Motif Atlas
Homologous match to HL_8CRE_013
Geometric discrepancy: 0.0704
The information below is about HL_8CRE_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_28252.6
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

9B11|1|L5|U|1317
9B11|1|L5|C|1318
9B11|1|L5|U|1319
9B11|1|L5|U|1320
9B11|1|L5|G|1321
9B11|1|L5|A|1322
9B11|1|L5|A|1323
9B11|1|L5|A|1324
9B11|1|L5|C|1325
9B11|1|L5|A|1326

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LB
Large ribosomal subunit protein uL3
Chain La
60S ribosomal protein L27a
Chain Le
60S ribosomal protein L32

Coloring options:


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